Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 8.9e-145 516.9 263 100.0
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 8.4e-127 457.2 263 85.6
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 4.8e-114 414.8 266 82.0
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 8.5e-111 404.1 263 80.2
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 3.7e-98 362.1 263 73.8
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 9.1e-97 357.5 262 72.5
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 1.0e-95 354.0 262 73.3
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 1.8e-92 343.2 253 67.6
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 1.3e-90 337.0 264 68.2
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 1.1e-86 323.9 176 83.5
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 6.3e-74 281.6 226 62.8
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 2.3e-71 273.1 208 64.4
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 3.8e-71 272.3 208 63.9
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 6.5e-71 271.6 174 71.8
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 1.5e-70 270.4 175 69.1
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 1.5e-70 270.4 208 63.9
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 1.2e-69 267.3 228 59.2
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 1.6e-69 266.9 174 72.4
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 4.0e-68 262.3 175 70.3
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 6.8e-68 261.5 176 71.0
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 8.9e-68 261.2 177 67.8
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 1.5e-67 260.4 244 55.7
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.5e-67 260.4 176 70.5
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.5e-67 260.4 176 71.0
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 2.0e-67 260.0 177 70.1
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 2.6e-67 259.6 230 57.0
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 4.4e-67 258.8 243 57.6
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 4.4e-67 258.8 258 55.0
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 5.7e-67 258.5 178 66.3
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 7.5e-67 258.1 261 52.9
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 9.8e-67 257.7 174 67.2
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 1.3e-66 257.3 203 60.6
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 1.3e-66 257.3 260 59.2
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 2.8e-66 256.1 175 66.3
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 3.7e-66 255.8 174 66.1
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 4.9e-66 255.4 178 66.9
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 4.9e-66 255.4 177 67.2
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 1.1e-65 254.2 178 65.7
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 1.1e-65 254.2 173 67.6
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 1.4e-65 253.8 230 56.1
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 9.2e-65 251.1 172 68.6
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 9.2e-65 251.1 170 65.9
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 9.2e-65 251.1 175 66.9
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 1.6e-64 250.4 173 64.7
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.6e-64 250.4 175 66.9
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 5.9e-64 248.4 264 53.8
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 1.3e-63 247.3 256 51.6
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 1.3e-63 247.3 175 65.7
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 1.3e-63 247.3 202 59.4
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 1.7e-63 246.9 174 69.0
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 5.0e-63 245.4 183 63.9
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 5.0e-63 245.4 247 50.6
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 6.6e-63 245.0 229 55.9
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 8.6e-63 244.6 177 63.3
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 8.6e-63 244.6 238 53.4
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 8.6e-63 244.6 181 64.6
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 1.5e-62 243.8 173 64.7
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 5.6e-62 241.9 231 52.8
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 7.3e-62 241.5 179 64.8
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 9.5e-62 241.1 209 56.9
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 9.5e-62 241.1 172 64.5
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 2.1e-61 240.0 255 54.5
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 4.7e-61 238.8 255 54.5
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 6.1e-61 238.4 179 63.7
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 8.0e-61 238.0 249 49.4
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 1.0e-60 237.7 174 60.3
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 1.4e-60 237.3 256 47.3
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 2.3e-60 236.5 179 62.0
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 3.0e-60 236.1 179 62.0
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 3.0e-60 236.1 179 64.8
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 5.2e-60 235.3 180 61.7
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 5.7e-59 231.9 175 58.3
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 5.7e-59 231.9 248 47.2
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 2.4e-57 226.5 252 52.4
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 1.6e-56 223.8 179 59.8
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 3.5e-56 222.6 207 56.5
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 4.3e-54 215.7 198 55.1
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 2.1e-53 213.4 170 58.2
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 8.0e-53 211.5 178 60.7
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 5.2e-52 208.8 180 55.0
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 1.7e-50 203.8 333 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 3.7e-50 202.6 180 53.9
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 2.7e-48 196.4 177 54.2
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 3.3e-46 189.5 178 51.1
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 6.2e-45 185.3 149 55.7
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 2.0e-43 180.3 150 60.7
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 3.4e-43 179.5 168 48.8
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 1.1e-41 174.5 119 74.8
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 2.3e-39 166.8 128 65.6
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 3.2e-33 146.4 159 53.5
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 7.8e-32 141.7 138 63.0
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 1.7e-31 140.6 119 59.7
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 8.7e-31 138.3 140 60.7
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 1.6e-29 134.0 148 45.3
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 2.1e-29 133.7 118 55.1
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 1.5e-14 84.3 52 65.4
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 7.4e-14 82.0 80 52.5
Cfa011867 Carpinus fangiana HOM05D007528 ORTHO05D008503 5.8e-11 72.4 80 45.0
Hma1.2p1_1327F.1_g275910 Hydrangea macrophylla HOM05D007528 ORTHO05D008503 1.4e-09 67.8 66 48.5
Pp3s30_790 Physcomitrium patens HOM05D002374 ORTHO05D003594 7.4e-06 55.5 84 39.3


User provided reference genes

Program Settings