Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 8.9e-168 593.6 310 100.0
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 2.2e-134 482.6 312 82.7
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 3.2e-133 478.8 316 82.6
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 4.3e-106 388.7 324 67.9
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 1.2e-103 380.6 328 65.9
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 7.6e-103 377.9 337 66.5
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 5.5e-101 371.7 324 65.4
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 1.9e-98 363.2 325 64.6
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 1.8e-96 356.7 332 62.3
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 9.1e-96 354.4 332 62.0
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 2.5e-93 346.3 322 63.7
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 1.2e-66 257.7 220 73.2
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 5.7e-66 255.4 338 50.0
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 3.7e-65 252.7 327 48.9
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 5.4e-64 248.8 316 50.6
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 4.2e-61 239.2 346 48.3
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.8e-60 236.5 301 50.8
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 1.0e-59 234.6 350 47.4
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 2.3e-51 206.8 341 45.7
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 6.8e-51 205.3 333 45.6
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 3.4e-50 203.0 367 42.5
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 1.4e-48 197.6 340 42.6
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.2e-48 196.4 331 45.0
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 3.5e-47 193.0 375 42.1
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 6.6e-46 188.7 289 43.3
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 5.6e-45 185.7 377 40.8
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 1.2e-44 184.5 333 42.0
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 2.3e-43 180.3 329 41.9
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 5.8e-42 175.6 390 36.2
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 1.1e-40 171.4 299 40.1
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 3.0e-38 163.3 373 36.5
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 5.0e-38 162.5 329 38.6
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 1.9e-37 160.6 377 35.5
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 4.3e-37 159.5 313 37.7
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 5.6e-37 159.1 281 39.1
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.2e-36 157.9 358 36.9
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 1.6e-36 157.5 336 39.6
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 2.3e-35 153.7 229 47.6
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 3.1e-35 153.3 319 35.4
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 4.0e-35 152.9 445 31.7
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 5.8e-34 149.1 350 37.4
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 2.2e-33 147.1 366 34.4
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 3.7e-33 146.4 102 65.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.9e-33 146.0 344 37.2
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 6.4e-33 145.6 366 35.8
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 6.4e-33 145.6 363 36.9
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 6.4e-33 145.6 332 38.6
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 5.1e-30 136.0 337 36.2
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 5.6e-29 132.5 289 35.6
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 2.1e-28 130.6 454 29.5
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 1.4e-27 127.9 391 33.5
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 1.4e-27 127.9 354 35.3
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 1.8e-27 127.5 387 31.3
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 3.1e-27 126.7 388 32.2
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 6.8e-27 125.6 364 32.4
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 3.4e-26 123.2 218 45.4
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 4.4e-26 122.9 319 34.5
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 7.6e-26 122.1 353 31.7
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 1.7e-25 120.9 151 55.6
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 2.9e-25 120.2 214 45.3
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 3.8e-25 119.8 257 35.8
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 4.9e-25 119.4 344 32.3
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 4.9e-25 119.4 209 37.8
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 5.4e-24 115.9 345 33.6
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 2.7e-23 113.6 151 53.0
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 4.6e-23 112.8 252 35.3
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 1.7e-22 110.9 319 33.2
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 5.1e-22 109.4 151 53.0
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 2.8e-20 103.6 448 28.6
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 1.1e-19 101.7 284 32.0
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.8e-19 100.9 113 45.1
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 1.2e-18 98.2 443 29.3
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 3.4e-18 96.7 227 36.1
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 4.9e-17 92.8 330 30.3
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 4.9e-17 92.8 344 27.6
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 1.4e-16 91.3 276 30.4
arahy.Tifrunner.gnm1.ann1.NYTL45 Arachis hypogaea HOM05D007667 ORTHO05D008033 3.5e-15 86.7 128 53.1
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 4.6e-15 86.3 277 28.5
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 6.0e-15 85.9 125 49.6
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 2.3e-14 84.0 83 59.0
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 3.9e-14 83.2 434 27.4
arahy.Tifrunner.gnm1.ann1.8931ZB Arachis hypogaea HOM05D007667 ORTHO05D008033 5.1e-14 82.8 121 52.9
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 6.6e-14 82.4 126 46.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.9e-13 80.9 136 41.2
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 4.3e-13 79.7 128 47.7
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 9.6e-13 78.6 237 27.8
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.8e-12 77.0 238 28.6
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 3.6e-12 76.6 274 27.4
arahy.Tifrunner.gnm1.ann1.W45WAC Arachis hypogaea HOM05D007667 ORTHO05D008033 6.2e-12 75.9 132 47.7
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 8.1e-12 75.5 233 28.3
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 8.1e-12 75.5 240 27.9
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 8.1e-12 75.5 240 27.9
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 1.8e-11 74.3 246 28.0
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 3.1e-11 73.6 193 32.1
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 4.0e-11 73.2 242 28.5
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 6.9e-11 72.4 237 30.0
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 2.0e-10 70.9 253 26.9
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 7.6e-10 68.9 238 26.9
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 7.6e-10 68.9 154 35.7
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 1.3e-09 68.2 249 25.7
HPP92_014340 Vanilla planifolia HOM05D007667 ORTHO05D008033 1.3e-09 68.2 92 46.7
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 2.2e-09 67.4 245 26.1
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 2.9e-09 67.0 116 37.9
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 2.9e-09 67.0 314 26.1
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 8.4e-09 65.5 234 26.9
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 1.1e-08 65.1 183 29.5
Cpa.g.sc33.176 Carica papaya HOM05D007667 ORTHO05D008033 1.4e-08 64.7 141 36.2
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 3.2e-08 63.5 66 51.5
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 7.1e-08 62.4 89 39.3
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 1.2e-07 61.6 83 37.3
MBI13_g31583_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.7e-07 60.5 92 45.7
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 3.5e-07 60.1 345 25.5
FvH4_1g29470 Fragaria vesca HOM05D007667 ORTHO05D008033 7.9e-07 58.9 147 36.7
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 1.8e-06 57.8 299 24.1
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 1.8e-06 57.8 299 24.1
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 3.9e-06 56.6 336 24.7
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 8.7e-06 55.5 300 25.3
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 8.7e-06 55.5 300 25.3


User provided reference genes

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