Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23662 Trifolium pratense HOM05D008036 ORTHO05D000174 5.8e-118 427.6 212 100.0
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 1.4e-71 273.5 300 51.0
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 2.9e-61 239.2 261 52.9
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 3.8e-61 238.8 268 51.5
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 7.9e-59 231.1 249 52.6
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 3.9e-58 228.8 266 51.5
Medtr1g052715 Medicago truncatula HOM05D008036 ORTHO05D000174 1.7e-48 196.8 149 64.4
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 1.6e-43 180.3 299 35.1
Medtr3g452170 Medicago truncatula HOM05D008036 ORTHO05D000174 4.5e-38 162.2 227 38.3
Medtr0048s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 7.7e-38 161.4 151 53.0
Medtr1g492690 Medicago truncatula HOM05D002441 ORTHO05D022927 8.5e-37 157.9 240 38.8
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 3.0e-34 149.4 148 49.3
Medtr2g010270 Medicago truncatula HOM05D008036 ORTHO05D000174 1.3e-32 144.1 146 50.0
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 1.1e-31 141.0 292 30.8
Medtr2g005490 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr2g007410 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr2g010570 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr3g031190 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr5g030110 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr5g056290 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr5g081190 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr5g091480 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr6g087820 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr7g024060 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr8g446640 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-31 138.3 147 48.3
Medtr7g451880 Medicago truncatula HOM05D008036 ORTHO05D000174 1.6e-30 137.1 147 46.9
Medtr7g074180 Medicago truncatula HOM05D008036 ORTHO05D000174 2.7e-30 136.3 146 47.3
Medtr4g058660 Medicago truncatula HOM05D008036 ORTHO05D000174 7.7e-30 134.8 147 46.3
Medtr1g011490 Medicago truncatula HOM05D008036 ORTHO05D000174 8.0e-27 124.8 141 46.1
Medtr1g023370 Medicago truncatula HOM05D008036 ORTHO05D000174 3.7e-24 115.9 147 43.5
TPR.G23548 Trifolium pratense HOM05D008036 ORTHO05D000174 4.1e-23 112.5 101 54.5
Medtr5g012180 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-22 110.2 147 42.2
TPR.G186 Trifolium pratense HOM05D020400 ORTHO05D022927 3.5e-22 109.4 70 80.0
Medtr5g045850 Medicago truncatula HOM05D008036 ORTHO05D000174 7.7e-22 108.2 147 42.9
Medtr8g005940 Medicago truncatula HOM05D008036 ORTHO05D000174 3.8e-21 105.9 147 40.8
Medtr0105s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 5.5e-20 102.1 134 42.5
Medtr2g040680 Medicago truncatula HOM05D008036 ORTHO05D000174 1.6e-19 100.5 116 44.0
TPR.G37330 Trifolium pratense HOM05D008036 ORTHO05D008317 2.1e-19 100.1 156 40.4
Medtr3g015660 Medicago truncatula HOM05D008036 ORTHO05D000174 3.6e-19 99.4 102 46.1
Medtr6g024030 Medicago truncatula HOM05D008036 ORTHO05D000174 1.8e-18 97.1 102 45.1
Medtr5g019960 Medicago truncatula HOM05D008036 ORTHO05D000174 4.0e-18 95.9 103 45.6
Medtr2g019040 Medicago truncatula HOM05D008036 ORTHO05D000174 1.3e-16 90.9 134 37.3
Lsat_1_v5_gn_3_84940 Lactuca sativa HOM05D009063 ORTHO05D011082 1.1e-15 87.8 205 28.3
TPR.G14420 Trifolium pratense HOM05D009380 ORTHO05D009933 1.1e-15 87.8 60 65.0
Medtr3g036220 Medicago truncatula HOM05D008036 ORTHO05D000174 2.4e-15 86.7 147 35.4
Medtr6g073570 Medicago truncatula HOM05D008036 ORTHO05D000174 1.2e-14 84.3 134 38.8
Medtr7g045450 Medicago truncatula HOM05D008036 ORTHO05D000174 1.2e-14 84.3 134 38.8
Medtr5g071020 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-14 83.6 147 37.4
CAN.G193.15 Capsicum annuum HOM05D002441 ORTHO05D002376 5.9e-14 82.0 168 31.0
Medtr3g007260 Medicago truncatula HOM05D008036 ORTHO05D000174 5.9e-14 82.0 78 51.3
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 1.7e-13 80.5 137 32.8
arahy.Tifrunner.gnm1.ann1.AJVM0N Arachis hypogaea HOM05D008664 ORTHO05D000174 1.7e-13 80.5 137 32.8
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 1.7e-13 80.5 137 32.8
arahy.Tifrunner.gnm1.ann1.W2LWD3 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.7e-13 80.5 137 32.8
Nitab4.5_0002265g0190 Nicotiana tabacum HOM05D000211 ORTHO05D008317 1.7e-13 80.5 215 26.5
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 2.3e-13 80.1 137 32.8
arahy.Tifrunner.gnm1.ann1.VX4W4R Arachis hypogaea HOM05D008664 ORTHO05D000174 2.9e-13 79.7 137 32.8
Medtr1g082860 Medicago truncatula HOM05D008036 ORTHO05D000174 5.0e-13 79.0 86 45.3
arahy.Tifrunner.gnm1.ann1.P65711 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.5e-12 77.4 137 31.4
Carub.0025s0004 Capsella rubella HOM05D000353 ORTHO05D000174 1.9e-12 77.0 151 29.1
SGA_v2.0_scaffold21G09448 Striga asiatica HOM05D000353 ORTHO05D000174 1.9e-12 77.0 201 27.9
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 2.5e-12 76.6 137 31.4
Ah.11g041650 Amaranthus hybridus HOM05D000353 ORTHO05D000174 4.3e-12 75.9 221 25.3
arahy.Tifrunner.gnm1.ann1.39QWAJ Arachis hypogaea HOM05D008664 ORTHO05D000174 5.6e-12 75.5 133 33.1
Thhalv10029208m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 5.6e-12 75.5 203 28.1
Carub.0012s0011 Capsella rubella HOM05D000353 ORTHO05D000174 7.3e-12 75.1 200 27.0
Carub.0016s0007 Capsella rubella HOM05D000353 ORTHO05D000174 9.5e-12 74.7 151 29.1
Carub.0006s2622 Capsella rubella HOM05D000353 ORTHO05D000174 8.0e-11 71.6 151 28.5
arahy.Tifrunner.gnm1.ann1.40YIIT Arachis hypogaea HOM05D008664 ORTHO05D000174 1.4e-10 70.9 129 32.6
Carub.0076s0001 Capsella rubella HOM05D000353 ORTHO05D000174 1.8e-10 70.5 151 28.5
Medtr5g057125 Medicago truncatula HOM05D000353 ORTHO05D002376 2.3e-10 70.1 207 23.7
TPR.G13367 Trifolium pratense HOM05D008036 ORTHO05D000174 3.0e-10 69.7 68 51.5
TPR.G27568 Trifolium pratense HOM05D008036 ORTHO05D022927 3.0e-10 69.7 50 68.0
Carub.0045s0002 Capsella rubella HOM05D000353 ORTHO05D000174 4.0e-10 69.3 201 24.9
ECA233G0025 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.0e-10 69.3 241 23.7
TPR.G9984 Trifolium pratense HOM05D005770 ORTHO05D006702 5.2e-10 68.9 35 94.3
Medtr4g032565 Medicago truncatula HOM05D002441 ORTHO05D002376 8.9e-10 68.2 72 43.1
Medtr4g032585 Medicago truncatula HOM05D000353 ORTHO05D002376 8.9e-10 68.2 72 43.1
ECA236G4996 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-09 67.8 231 24.7
Thhalv10002212m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.2e-09 67.8 167 29.9
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 1.2e-09 67.8 160 28.8
Carub.0004s0702 Capsella rubella HOM05D000353 ORTHO05D000174 2.0e-09 67.0 151 27.8
Carub.0016s0013 Capsella rubella HOM05D000353 ORTHO05D000174 2.0e-09 67.0 154 27.9
BcaB08g35071 Brassica carinata HOM05D000353 ORTHO05D000174 2.6e-09 66.6 197 22.8
Psat4g017520 Pisum sativum HOM05D008036 ORTHO05D000174 3.4e-09 66.2 55 60.0
BcaB05g22552 Brassica carinata HOM05D000353 ORTHO05D000174 4.4e-09 65.9 152 28.3
C06p15640 Brassica napus HOM05D000353 ORTHO05D000174 5.7e-09 65.5 149 33.6
Medtr2g435900 Medicago truncatula HOM05D008036 ORTHO05D000174 5.7e-09 65.5 70 44.3
Medtr3g449160 Medicago truncatula HOM05D008036 ORTHO05D000174 5.7e-09 65.5 70 44.3
BcaC06g36423 Brassica carinata HOM05D000353 ORTHO05D000174 7.5e-09 65.1 155 31.6
Thhalv10002946m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 7.5e-09 65.1 209 26.3
Lj4g0014650 Lotus japonicus HOM05D020041 ORTHO05D030020 7.5e-09 65.1 199 25.1
BcaC08g44543 Brassica carinata HOM05D000353 ORTHO05D000174 9.8e-09 64.7 155 31.0
TPR.G12414 Trifolium pratense HOM05D000001 ORTHO05D000424 9.8e-09 64.7 107 35.5
LjContig00141g0021501 Lotus japonicus HOM05D024106 ORTHO05D002376 1.3e-08 64.3 228 21.9
Medtr8g064300 Medicago truncatula HOM05D006380 ORTHO05D002376 2.2e-08 63.5 104 36.5
BcaB03g15167 Brassica carinata HOM05D000353 ORTHO05D000174 2.9e-08 63.2 183 24.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.9e-08 63.2 154 28.6
Medtr7g039300 Medicago truncatula HOM05D008036 ORTHO05D000174 2.9e-08 63.2 57 57.9
A07p36560 Brassica napus HOM05D000353 ORTHO05D000174 3.7e-08 62.8 149 32.9
Medtr3g108500 Medicago truncatula HOM05D000353 ORTHO05D002376 3.7e-08 62.8 56 58.9
Nitab4.5_0000980g0190 Nicotiana tabacum HOM05D002441 ORTHO05D008317 3.7e-08 62.8 113 34.5
BcaC03g18358 Brassica carinata HOM05D000353 ORTHO05D000174 8.3e-08 61.6 121 27.3
Medtr1g115520 Medicago truncatula HOM05D002441 ORTHO05D002376 1.1e-07 61.2 72 40.3
BcaB01g01665 Brassica carinata HOM05D000353 ORTHO05D000174 1.8e-07 60.5 150 24.7
ECA240G2426 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.8e-07 60.5 134 32.1
Lsat_1_v5_gn_3_32300 Lactuca sativa HOM05D007823 ORTHO05D000174 1.8e-07 60.5 206 25.7
BcaC01g00912 Brassica carinata HOM05D000353 ORTHO05D000174 2.4e-07 60.1 150 33.3
TPR.G11060 Trifolium pratense HOM05D008036 ORTHO05D000174 2.4e-07 60.1 60 48.3
Medtr5g093790 Medicago truncatula HOM05D006380 ORTHO05D002376 3.2e-07 59.7 96 34.4
SGA_v2.0_scaffold101G29754 Striga asiatica HOM05D011754 ORTHO05D014689 3.2e-07 59.7 255 22.4
BraA05t21677Z Brassica rapa HOM05D000353 ORTHO05D000174 4.1e-07 59.3 186 23.1
HanXRQChr13g0412841 Helianthus annuus HOM05D003964 ORTHO05D000174 4.1e-07 59.3 138 30.4
HanXRQChr07g0201551 Helianthus annuus HOM05D003964 ORTHO05D000174 5.4e-07 58.9 136 30.1
Lsat_1_v5_gn_4_180860 Lactuca sativa HOM05D024279 ORTHO05D000174 5.4e-07 58.9 131 29.8
Nitab4.5_0000070g0310 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.4e-07 58.9 140 26.4
BcaC05g28968 Brassica carinata HOM05D000353 ORTHO05D000174 7.0e-07 58.5 150 25.3
ECA233G3201 Erigeron canadensis HOM05D000353 ORTHO05D000174 7.0e-07 58.5 285 24.6
Lsat_1_v5_gn_7_8760 Lactuca sativa HOM05D009063 ORTHO05D011082 7.0e-07 58.5 140 28.6
A05p20920 Brassica napus HOM05D000353 ORTHO05D000174 9.2e-07 58.2 109 27.5
BraA05t20997Z Brassica rapa HOM05D000353 ORTHO05D000174 9.2e-07 58.2 109 27.5
BcaC09g49834 Brassica carinata HOM05D000353 ORTHO05D000174 1.2e-06 57.8 106 28.3
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 1.2e-06 57.8 151 30.5
BolC1t04067H Brassica oleracea HOM05D000353 ORTHO05D000174 1.6e-06 57.4 186 22.6
Carub.0003s3392 Capsella rubella HOM05D000353 ORTHO05D000174 1.6e-06 57.4 153 30.7
Lsat_1_v5_gn_8_53420 Lactuca sativa HOM05D000147 ORTHO05D001254 1.6e-06 57.4 138 27.5
Medtr7g096440 Medicago truncatula HOM05D000096 ORTHO05D000045 1.6e-06 57.4 72 36.1
ECA246G2952 Erigeron canadensis HOM05D009063 ORTHO05D011082 2.0e-06 57.0 149 27.5
Carub.0007s3522 Capsella rubella HOM05D000353 ORTHO05D000174 2.7e-06 56.6 106 32.1
Lsat_1_v5_gn_3_131701 Lactuca sativa HOM05D009063 ORTHO05D011082 2.7e-06 56.6 230 23.5
HanXRQChr02g0033321 Helianthus annuus HOM05D003964 ORTHO05D000174 3.5e-06 56.2 107 30.8
Medtr4g014890 Medicago truncatula HOM05D002090 ORTHO05D001923 3.5e-06 56.2 142 30.3
SGA_v2.0_scaffold9G04715 Striga asiatica HOM05D008036 ORTHO05D000174 3.5e-06 56.2 90 34.4
BcaC04g20811 Brassica carinata HOM05D000353 ORTHO05D000174 4.6e-06 55.8 170 27.6
BcaC05g25260 Brassica carinata HOM05D000353 ORTHO05D000174 4.6e-06 55.8 109 26.6
Carub.0001s3741 Capsella rubella HOM05D000353 ORTHO05D000174 4.6e-06 55.8 148 29.1
Thhalv10029126m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 4.6e-06 55.8 275 22.2
Medtr3g055660 Medicago truncatula HOM05D002090 ORTHO05D001923 4.6e-06 55.8 142 30.3
Medtr3g068135 Medicago truncatula HOM05D008036 ORTHO05D025835 4.6e-06 55.8 146 30.1
C01p41130 Brassica napus HOM05D000353 ORTHO05D000174 5.9e-06 55.5 109 26.6
C04p64600 Brassica napus HOM05D000353 ORTHO05D000174 5.9e-06 55.5 109 26.6
C08p30740 Brassica napus HOM05D000353 ORTHO05D000174 5.9e-06 55.5 109 26.6
BraA02t07844Z Brassica rapa HOM05D000353 ORTHO05D000174 5.9e-06 55.5 149 27.5
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 5.9e-06 55.5 152 26.3
ECA247G4094 Erigeron canadensis HOM05D000353 ORTHO05D000174 5.9e-06 55.5 116 27.6
ECA232G3959 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.8e-06 55.1 246 22.8
ECA232G4682 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.8e-06 55.1 136 31.6
Medtr1g110330 Medicago truncatula HOM05D008036 ORTHO05D000174 7.8e-06 55.1 71 43.7
Nitab4.5_0001403g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 7.8e-06 55.1 133 30.1


User provided reference genes

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