Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 7.5e-149 531.6 261 100.0
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 6.4e-124 448.7 261 85.8
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 1.5e-77 294.7 249 61.4
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 7.6e-77 292.4 239 61.9
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 8.4e-76 288.9 248 60.5
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 1.4e-70 271.6 264 56.8
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 5.5e-67 259.6 235 59.1
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 2.4e-62 244.2 154 80.5
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 4.8e-55 219.9 241 49.8
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 5.3e-54 216.5 244 48.8
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 9.1e-54 215.7 130 80.0
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 7.7e-53 212.6 233 49.8
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 1.3e-52 211.8 243 49.0
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 5.5e-51 206.5 244 49.6
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 1.6e-50 204.9 269 47.6
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 1.0e-49 202.2 221 50.2
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.6e-48 197.6 225 48.4
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.6e-48 197.6 225 48.4
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 7.4e-48 196.1 235 48.9
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 1.3e-47 195.3 221 49.3
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 1.3e-47 195.3 248 43.5
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 2.8e-47 194.1 214 46.7
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 3.7e-47 193.7 238 49.2
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 4.8e-47 193.4 214 46.7
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 6.3e-47 193.0 233 44.6
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 6.3e-47 193.0 252 46.0
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 4.1e-46 190.3 233 43.8
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 4.1e-46 190.3 239 46.9
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 4.1e-46 190.3 255 45.5
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 5.3e-46 189.9 234 44.9
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 5.3e-46 189.9 233 43.3
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 9.1e-46 189.1 248 43.5
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 9.1e-46 189.1 248 43.5
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 9.1e-46 189.1 236 46.6
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 2.0e-45 188.0 224 47.3
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 2.6e-45 187.6 245 43.3
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 3.5e-45 187.2 240 47.5
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.0e-44 185.7 239 46.9
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 1.3e-44 185.3 224 46.4
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 5.0e-44 183.3 236 42.8
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 8.5e-44 182.6 250 42.4
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 1.5e-43 181.8 233 42.5
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.9e-43 181.4 248 43.5
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 4.2e-43 180.3 221 47.1
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 1.6e-42 178.3 236 46.2
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 2.7e-42 177.6 218 46.3
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 4.7e-42 176.8 228 41.7
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 1.8e-41 174.9 217 45.6
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 1.8e-41 174.9 229 46.7
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 6.7e-41 172.9 235 41.7
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 4.4e-40 170.2 226 42.5
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 3.7e-39 167.2 231 43.3
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 1.1e-38 165.6 217 46.1
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 1.4e-38 165.2 220 43.6
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 3.1e-38 164.1 226 42.9
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 9.1e-38 162.5 224 42.9
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 3.5e-37 160.6 268 39.9
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 7.7e-37 159.5 242 39.7
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 7.7e-37 159.5 248 41.9
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.0e-36 159.1 230 38.7
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 6.5e-36 156.4 225 41.8
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 8.5e-36 156.0 231 42.4
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 2.1e-34 151.4 225 40.9
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 8.0e-34 149.4 228 42.1
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 4.0e-33 147.1 202 43.6
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 5.2e-33 146.7 222 40.5
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 8.8e-33 146.0 207 41.5
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 1.2e-32 145.6 148 48.6
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.2e-32 145.6 165 45.5
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 2.9e-28 131.0 147 43.5
Gohir.A08G039000 Gossypium hirsutum HOM05D007545 ORTHO05D009579 5.5e-27 126.7 154 44.2
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 1.2e-24 119.0 163 41.7
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 1.5e-24 118.6 94 57.4
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 3.4e-24 117.5 155 42.6
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.4e-22 111.3 145 40.7
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 5.4e-22 110.2 143 41.3
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 7.0e-22 109.8 145 41.4
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 2.7e-21 107.8 152 40.8
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 2.7e-21 107.8 143 41.3
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.9e-20 104.4 154 40.3
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 3.9e-20 104.0 137 40.9
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 8.6e-20 102.8 146 39.7
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 2.5e-19 101.3 157 35.0
FvH4_1g30171 Fragaria vesca HOM05D007545 ORTHO05D009579 2.5e-19 101.3 123 49.6
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 8.0e-18 96.3 210 31.9
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 3.1e-17 94.4 202 31.7
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 4.0e-17 94.0 164 36.0
CsaV3_3G017850 Cucumis sativus L. HOM05D007545 ORTHO05D009579 5.2e-17 93.6 119 47.1
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 3.2e-14 84.3 138 34.8
HPP92_026949 Vanilla planifolia HOM05D007545 ORTHO05D009579 4.1e-14 84.0 92 39.1
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 5.0e-12 77.0 205 28.3
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 1.5e-11 75.5 186 28.5
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 3.6e-10 70.9 219 26.5
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 3.6e-10 70.9 169 27.2
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 6.2e-10 70.1 218 23.9
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 8.0e-10 69.7 248 26.2
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 1.1e-09 69.3 173 28.9
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 1.1e-09 69.3 208 25.5
ATR1089G063 Amborella trichopoda HOM05D008483 ORTHO05D010726 1.8e-09 68.6 214 28.0
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.8e-09 68.6 214 24.8
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 3.1e-09 67.8 216 23.6
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 3.1e-09 67.8 213 24.4
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 5.2e-09 67.0 183 27.3
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 5.2e-09 67.0 179 27.9
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 8.9e-09 66.2 101 30.7
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 8.9e-09 66.2 184 27.2
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 1.2e-08 65.9 205 25.9
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.2e-08 65.9 236 23.7
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 1.2e-08 65.9 207 26.6
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 1.2e-08 65.9 207 26.6
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.5e-08 65.5 220 25.0
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.5e-08 65.5 247 21.9
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.0e-08 65.1 215 24.2
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 2.0e-08 65.1 219 21.9
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 2.6e-08 64.7 220 25.0
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 2.6e-08 64.7 201 27.9
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 3.4e-08 64.3 200 27.0
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 3.4e-08 64.3 167 29.9
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 3.4e-08 64.3 220 27.7
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 3.4e-08 64.3 186 26.9
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 4.4e-08 63.9 186 26.3
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 4.4e-08 63.9 202 29.2
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 5.8e-08 63.5 214 22.9
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 5.8e-08 63.5 135 31.9
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 5.8e-08 63.5 197 27.9
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 7.5e-08 63.2 170 30.0
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 7.5e-08 63.2 170 30.0
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 7.5e-08 63.2 233 23.6
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 7.5e-08 63.2 178 28.1
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 9.8e-08 62.8 210 27.1
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 9.8e-08 62.8 170 30.0
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 9.8e-08 62.8 170 30.0
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.3e-07 62.4 233 23.2
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 1.3e-07 62.4 205 26.3
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.7e-07 62.0 167 28.1
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 1.7e-07 62.0 239 25.5
Actinidia12984 Actinidia chinensis HOM05D007675 ORTHO05D009699 2.2e-07 61.6 192 27.1
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.2e-07 61.6 220 24.1
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 2.2e-07 61.6 169 30.2
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 2.2e-07 61.6 169 30.2
Zm00001eb080520 Zea mays HOM05D007545 ORTHO05D009579 2.2e-07 61.6 149 28.2
CDE07G1026 Ceratophyllum demersum HOM05D007545 ORTHO05D009579 3.7e-07 60.8 55 45.5
Nitab4.5_0005124g0010 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.7e-07 60.8 47 53.2
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 3.7e-07 60.8 166 28.3
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.7e-07 60.8 201 21.9
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.7e-07 60.8 218 24.3
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 4.9e-07 60.5 149 29.5
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 4.9e-07 60.5 170 29.4
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 4.9e-07 60.5 258 20.2
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 6.4e-07 60.1 208 22.1
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 6.4e-07 60.1 213 20.2
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 8.3e-07 59.7 213 20.2
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 8.3e-07 59.7 238 25.6
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 8.3e-07 59.7 178 28.1
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.1e-06 59.3 199 24.6
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 1.1e-06 59.3 210 29.0
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 1.1e-06 59.3 203 24.6
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 1.1e-06 59.3 154 31.2
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 1.4e-06 58.9 205 25.4
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 1.4e-06 58.9 212 24.1
Nitab4.5_0000876g0030 Nicotiana tabacum HOM05D007675 ORTHO05D009699 1.4e-06 58.9 222 28.4
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 1.4e-06 58.9 162 28.4
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 1.4e-06 58.9 251 22.3
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 1.9e-06 58.5 42 57.1
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 1.9e-06 58.5 237 21.1
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.9e-06 58.5 208 26.0
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 2.4e-06 58.2 197 24.9
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 2.4e-06 58.2 213 19.7
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 2.4e-06 58.2 181 23.8
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 4.1e-06 57.4 207 23.7
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 4.1e-06 57.4 203 23.6
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 4.1e-06 57.4 187 25.1
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 4.1e-06 57.4 174 25.3
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 4.1e-06 57.4 194 28.9
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 4.1e-06 57.4 205 23.4
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.1e-06 57.4 170 27.1
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 5.4e-06 57.0 207 24.6
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 5.4e-06 57.0 246 27.2
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 9.2e-06 56.2 200 25.5
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 9.2e-06 56.2 174 25.9
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 9.2e-06 56.2 219 25.1
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 9.2e-06 56.2 188 27.7
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 9.2e-06 56.2 160 28.8
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 9.2e-06 56.2 257 22.2


User provided reference genes

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