Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 3.8e-38 161.0 81 100.0
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 3.5e-31 137.9 81 86.4
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 2.3e-30 135.2 81 82.7
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 6.6e-30 133.7 81 81.5
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 8.3e-25 116.7 78 73.1
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 2.7e-23 111.7 74 73.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-22 109.8 74 70.3
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-22 109.8 74 70.3
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 1.0e-22 109.8 74 70.3
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.2e-20 102.8 78 70.5
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 2.3e-19 98.6 78 64.1
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.4e-16 89.4 60 70.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.2e-15 86.3 75 60.0
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.5e-15 84.7 60 66.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 4.6e-15 84.3 60 65.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.7e-14 82.4 61 62.3
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.7e-14 82.4 60 65.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.3e-14 82.0 60 63.3
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.0e-14 81.6 60 61.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 8.6e-14 80.1 60 60.0
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.1e-13 79.7 60 60.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.6e-13 77.4 60 61.7
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 5.6e-13 77.4 60 60.0
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 9.5e-13 76.6 60 61.7
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.2e-12 76.3 60 58.3
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.1e-12 75.5 60 58.3
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 8.1e-12 73.6 61 59.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.1e-11 73.2 60 56.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-11 73.2 60 56.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-11 73.2 60 56.7
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.1e-11 73.2 61 55.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.1e-11 73.2 60 56.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.4e-11 72.8 60 55.0
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.8e-11 72.4 60 53.3
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.8e-11 72.4 58 55.2
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.8e-11 72.4 60 60.0
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.3e-11 72.0 61 55.7
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.3e-11 72.0 57 61.4
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.3e-11 72.0 61 54.1
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 3.1e-11 71.6 60 56.7
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 6.8e-11 70.5 54 61.1
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 6.8e-11 70.5 60 56.7
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 6.8e-11 70.5 60 56.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 8.9e-11 70.1 60 56.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 8.9e-11 70.1 60 56.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 8.9e-11 70.1 60 56.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 8.9e-11 70.1 60 56.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.2e-10 69.7 60 55.0
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.2e-10 69.7 61 54.1
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 2.0e-10 68.9 60 55.0
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.0e-10 68.9 60 58.3
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 2.6e-10 68.6 60 56.7
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 2.6e-10 68.6 60 55.0
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 2.6e-10 68.6 60 56.7
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 2.6e-10 68.6 60 55.0
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.6e-10 68.6 58 53.4
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 3.4e-10 68.2 60 53.3
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 5.8e-10 67.4 60 53.3
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 5.8e-10 67.4 60 55.0
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.7e-09 65.9 60 55.0
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 2.9e-09 65.1 57 56.1
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.9e-09 65.1 61 55.7
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.1e-08 63.2 60 51.7
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.4e-08 62.8 61 49.2
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.9e-08 62.4 50 50.0
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 9.2e-08 60.1 60 48.3
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.6e-07 59.3 60 50.0
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 2.7e-07 58.5 60 50.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.8 53 49.1
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.0e-06 56.6 53 49.1
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.3e-06 56.2 53 49.1
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 1.3e-06 56.2 56 44.6
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.7e-06 55.8 53 49.1
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.7e-06 55.8 46 56.5
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 2.3e-06 55.5 53 50.9
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 2.3e-06 55.5 53 49.1
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 3.0e-06 55.1 53 50.9
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.1e-06 54.3 53 47.2
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 5.1e-06 54.3 53 47.2
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 5.1e-06 54.3 48 47.9
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.6e-06 53.5 53 47.2


User provided reference genes

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