Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 4.0e-63 244.6 123 100.0
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 2.1e-48 195.7 127 84.3
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.3e-45 186.4 127 80.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.8e-31 139.4 124 63.7
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 4.5e-30 134.8 124 62.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.4e-28 129.8 124 60.5
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.5e-28 129.0 128 61.7
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 3.2e-28 128.6 124 61.3
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 9.3e-28 127.1 127 55.9
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-27 125.9 123 56.1
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.9e-26 121.7 128 55.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.5e-25 119.0 126 54.8
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.3e-25 118.6 127 53.5
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.2e-24 115.9 124 55.6
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 2.8e-24 115.5 126 53.2
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-23 113.6 126 52.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-23 113.6 126 52.4
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 2.4e-23 112.5 124 54.8
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 3.1e-23 112.1 125 51.2
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 9.0e-23 110.5 124 52.4
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 9.0e-23 110.5 123 52.8
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 2.0e-22 109.4 125 52.0
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.0e-22 109.4 125 53.6
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.0e-22 109.4 124 51.6
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.4e-22 108.6 123 48.0
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 5.9e-22 107.8 129 48.8
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 7.2e-20 100.9 125 50.4
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 9.3e-20 100.5 127 51.2
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.6e-19 98.6 121 47.9
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.4e-18 96.7 123 48.0
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 2.3e-18 95.9 127 46.5
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 5.7e-17 91.3 108 53.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 8.2e-16 87.4 128 45.3
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 6.9e-15 84.3 128 43.8
Medtr7g026910 Medicago truncatula HOM05D003805 ORTHO05D004300 1.5e-14 83.2 90 60.0
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.0e-14 82.8 130 43.1
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.4e-14 82.0 124 45.2
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.5e-14 81.6 135 43.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.5e-14 81.6 135 43.0
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 4.5e-14 81.6 128 41.4
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.5e-14 81.6 127 43.3
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.5e-14 81.6 128 39.8
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 5.9e-14 81.3 130 42.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.7e-14 80.9 128 43.0
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-13 80.1 129 40.3
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.9e-13 79.0 135 42.2
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.9e-13 79.0 121 39.7
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 5.0e-13 78.2 58 55.2
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 8.5e-13 77.4 61 54.1
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-12 76.6 65 58.5
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.4e-12 76.6 125 41.6
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.9e-12 76.3 125 43.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.5e-12 75.9 131 39.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.2e-12 74.3 137 39.4
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 9.4e-12 73.9 130 39.2
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 9.4e-12 73.9 93 46.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-11 73.6 136 43.4
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.2e-11 73.6 132 37.9
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 134 38.1
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.6e-11 73.2 138 41.3
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.6e-11 73.2 131 41.2
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.7e-11 72.4 127 42.5
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.6e-11 72.0 66 56.1
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.6e-11 72.0 127 42.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.6e-11 72.0 66 56.1
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-11 72.0 131 40.5
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-11 72.0 131 40.5
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-11 72.0 131 40.5
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 3.6e-11 72.0 65 56.9
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 3.6e-11 72.0 125 40.0
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.7e-11 71.6 137 41.6
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.7e-11 71.6 137 41.6
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.7e-11 71.6 133 39.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.1e-11 71.2 133 40.6
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-11 71.2 128 43.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 6.1e-11 71.2 130 40.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 7.9e-11 70.9 48 64.6
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.9e-11 70.9 129 44.2
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.0e-10 70.5 128 43.8
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-10 70.1 132 39.4
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-10 70.1 132 39.4
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-10 70.1 132 39.4
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-10 70.1 132 39.4
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.4e-10 70.1 66 47.0
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.8e-10 69.7 133 40.6
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-10 69.7 129 42.6
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.8e-10 69.7 127 41.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.8e-10 69.7 126 39.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-10 69.7 133 38.3
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-10 69.3 131 38.9
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-10 69.3 131 38.9
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.3e-10 69.3 131 38.9
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-10 69.3 131 38.9
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 2.3e-10 69.3 136 38.2
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-10 68.9 133 40.6
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-10 68.9 129 42.6
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-10 68.9 131 38.2
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.0e-10 68.9 52 51.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.0e-10 68.9 121 35.5
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.0e-10 68.9 121 33.9
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.9e-10 68.6 132 39.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.9e-10 68.6 133 40.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.9e-10 68.6 131 38.9
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.9e-10 68.6 135 36.3
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.9e-10 68.6 131 38.9
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 5.1e-10 68.2 132 34.8
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.1e-10 68.2 130 41.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 5.1e-10 68.2 129 42.6
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 5.1e-10 68.2 133 41.4
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 5.1e-10 68.2 129 42.6
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.1e-10 68.2 130 41.5
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 6.7e-10 67.8 129 42.6
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 6.7e-10 67.8 98 40.8
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 6.7e-10 67.8 124 39.5
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.7e-10 67.8 130 41.5
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 8.8e-10 67.4 130 36.2
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-09 67.0 78 44.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-09 67.0 131 39.7
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-09 67.0 131 39.7
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.1e-09 67.0 124 37.9
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.5e-09 66.6 117 37.6
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.0e-09 66.2 70 47.1
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-09 65.9 140 40.0
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.4e-09 65.1 36 77.8
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.4e-09 65.1 133 39.1
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.7e-09 64.7 142 35.2
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.7e-09 64.7 133 37.6
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.7e-09 64.7 138 38.4
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.4e-09 64.3 129 34.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 7.4e-09 64.3 125 39.2
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 7.4e-09 64.3 125 39.2
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 7.4e-09 64.3 50 54.0
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.7e-09 63.9 130 36.2
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.3e-08 63.5 111 34.2
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.3e-08 63.5 121 35.5
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.7e-08 63.2 134 35.1
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.7e-08 63.2 128 41.4
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.7e-08 63.2 60 45.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 2.2e-08 62.8 129 34.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 2.8e-08 62.4 164 34.1
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.8e-08 62.4 144 36.8
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 3.7e-08 62.0 132 34.1
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 3.7e-08 62.0 132 34.1
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 3.7e-08 62.0 132 34.1
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 58 50.0
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 8.2e-08 60.8 85 42.4
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 8.2e-08 60.8 131 34.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 8.2e-08 60.8 111 36.0
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 8.2e-08 60.8 111 35.1
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.4e-07 60.1 111 36.9
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.8e-07 59.7 111 34.2
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.1e-07 58.9 111 33.3
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 3.1e-07 58.9 49 49.0
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 4.1e-07 58.5 112 35.7
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 5.3e-07 58.2 37 64.9
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 5.3e-07 58.2 114 34.2
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 7.0e-07 57.8 110 39.1
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.1e-07 57.4 109 33.0
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.1e-07 57.4 111 36.0
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.5e-06 56.6 113 31.9
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.6e-06 55.8 110 39.1
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.7e-06 54.3 112 36.6


User provided reference genes

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