Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 0.0e+00 1233.4 910 100.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.1e-266 923.7 927 82.0
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 3.3e-239 832.4 949 70.7
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 7.7e-204 714.9 923 57.3
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 2.9e-190 669.8 919 62.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 4.0e-176 622.9 931 64.7
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.1e-170 604.7 922 56.1
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 2.5e-170 603.6 919 63.4
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.6e-164 584.3 944 64.2
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 7.8e-164 582.0 926 61.9
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 7.6e-159 565.5 1006 60.3
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.4e-149 534.6 973 61.2
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 2.7e-148 530.4 923 63.1
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 7.6e-143 512.3 953 59.7
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 9.4e-117 425.6 945 52.8
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 5.2e-107 393.3 932 50.6
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 6.7e-107 392.9 942 52.9
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 3.7e-105 387.1 944 54.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.8e-104 384.8 970 51.2
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 2.4e-104 384.4 947 51.0
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.3e-102 378.6 938 53.9
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.2e-100 372.1 955 54.8
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 5.7e-98 363.2 937 51.0
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 5.0e-94 350.1 940 53.7
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-89 334.7 930 50.8
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 5.4e-88 330.1 930 52.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.0e-87 328.2 938 51.6
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.7e-87 327.8 955 50.2
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 7.8e-87 326.2 932 48.2
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 7.8e-87 326.2 932 48.2
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-86 323.9 936 49.0
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 6.6e-86 323.2 930 52.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.1e-85 322.4 957 47.2
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.9e-85 321.6 930 51.2
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.9e-85 321.6 851 49.7
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 9.5e-85 319.3 1008 49.4
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.6e-84 318.5 972 44.1
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 4.7e-84 317.0 936 50.5
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 4.0e-83 313.9 846 52.0
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.8e-83 313.2 937 47.8
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.5e-82 312.0 936 48.7
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.9e-78 297.4 944 49.6
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 1.8e-75 288.5 926 50.2
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 3.1e-75 287.7 931 49.2
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 5.8e-74 283.5 228 70.6
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.4e-73 280.0 1005 43.3
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.9e-72 278.5 308 56.5
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.4e-72 276.9 998 42.6
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.2e-71 275.8 957 45.2
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.5e-71 274.2 988 45.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 3.0e-70 271.2 268 59.7
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.5e-69 268.9 234 64.5
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.5e-69 268.9 961 45.9
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.9e-69 268.5 954 46.1
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.9e-69 268.5 274 62.0
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 2.1e-68 265.0 315 53.3
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 2.1e-68 265.0 969 42.6
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.4e-67 262.3 282 56.4
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 4.0e-67 260.8 282 59.9
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 6.8e-67 260.0 295 56.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.2e-66 259.2 287 59.2
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.2e-66 259.2 964 44.2
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.0e-66 258.5 867 46.8
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 2.6e-66 258.1 234 61.1
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 3.4e-66 257.7 933 51.4
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 5.8e-66 256.9 317 56.5
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 7.5e-66 256.5 945 42.3
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 7.5e-66 256.5 293 57.7
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.4e-64 252.3 236 61.0
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.2e-63 249.2 211 65.9
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.2e-63 249.2 312 55.1
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.0e-62 246.1 316 56.6
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 6.6e-62 243.4 161 77.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 8.6e-62 243.0 286 56.6
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.5e-61 242.3 961 48.6
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.5e-61 241.5 214 62.1
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 3.3e-61 241.1 985 42.5
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 3.6e-60 237.7 859 44.0
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 2.4e-59 235.0 940 47.4
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.4e-59 235.0 991 42.7
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.0e-59 234.2 954 38.9
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 8.9e-59 233.0 232 60.8
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.2e-58 232.6 943 46.9
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 3.4e-58 231.1 282 59.6
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 4.4e-58 230.7 322 49.7
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.2e-57 228.4 267 51.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.2e-57 228.4 267 51.7
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 3.8e-57 227.6 215 60.9
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.4e-56 225.7 135 84.4
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.9e-56 225.3 251 54.2
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.7e-55 221.5 968 43.6
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 7.8e-55 219.9 146 76.7
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.3e-54 219.2 210 59.5
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.7e-54 218.8 136 80.1
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 6.6e-54 216.9 309 53.7
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 8.6e-54 216.5 321 49.5
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-53 216.1 325 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 3.3e-53 214.5 237 56.1
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 5.6e-53 213.8 927 44.9
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 9.6e-53 213.0 953 43.2
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.8e-52 211.5 945 45.1
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.1e-51 209.5 307 53.1
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.8e-51 208.8 932 51.2
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 9.0e-51 206.5 980 38.9
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.6e-50 204.9 943 47.0
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 5.8e-50 203.8 221 53.8
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 3.8e-49 201.1 173 61.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 3.8e-49 201.1 269 50.6
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.9e-48 198.7 929 40.7
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 4.2e-48 197.6 972 45.4
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 4.2e-48 197.6 129 74.4
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.3e-46 191.8 113 84.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 5.1e-46 190.7 134 70.9
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.4e-41 173.7 962 41.2
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 6.4e-41 173.7 198 52.0
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 8.4e-41 173.3 160 57.5
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.4e-35 156.0 782 43.5
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 7.6e-34 150.2 124 62.1
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 2.7e-31 141.7 134 60.4
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 4.3e-29 134.4 182 47.3
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 9.6e-29 133.3 127 57.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 2.5e-21 108.6 156 44.2
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.6e-20 105.9 127 52.0
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 8.2e-20 103.6 145 44.8
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 1.1e-19 103.2 402 42.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.5e-18 99.4 83 65.1
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.1e-15 89.0 62 71.0
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.0e-09 70.1 50 72.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 6.1e-07 60.8 121 33.1


User provided reference genes

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