Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 6.8e-27 123.2 62 100.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 4.7e-20 100.5 51 94.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 6.2e-20 100.1 53 92.5
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 6.2e-20 100.1 53 92.5
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.0e-19 99.4 51 92.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.3e-19 98.2 51 92.2
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 3.1e-19 97.8 51 92.2
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 9.8e-18 92.8 51 88.2
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 1.7e-17 92.0 51 88.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.7e-17 92.0 51 88.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 4.1e-16 87.4 51 84.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 5.4e-16 87.0 51 80.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 6.0e-15 83.6 51 74.5
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.7e-14 82.0 57 64.9
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 3.0e-14 81.3 54 68.5
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 6.6e-14 80.1 51 72.5
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 8.6e-14 79.7 51 74.5
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 3.3e-13 77.8 37 100.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.2e-12 75.9 51 68.6
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.2e-12 75.9 51 66.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.2e-12 75.9 51 66.7
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 2.1e-12 75.1 51 66.7
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 2.8e-12 74.7 51 70.6
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.6e-12 74.3 51 64.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 4.7e-12 73.9 51 62.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.1e-12 73.2 51 64.7
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 1.4e-11 72.4 51 64.7
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.4e-11 72.4 51 62.7
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 2.3e-11 71.6 51 64.7
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 4.0e-11 70.9 51 60.8
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 4.0e-11 70.9 51 68.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 5.2e-11 70.5 51 64.7
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 8.9e-11 69.7 53 64.2
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 8.9e-11 69.7 62 56.5
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.2e-10 69.3 53 62.3
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.2e-10 69.3 51 60.8
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.5e-10 68.9 51 64.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.5e-10 68.9 51 62.7
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.0e-10 68.6 51 62.7
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 2.0e-10 68.6 53 64.2
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 2.6e-10 68.2 54 59.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 2.6e-10 68.2 51 64.7
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 3.4e-10 67.8 51 54.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 5.8e-10 67.0 51 62.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 5.8e-10 67.0 50 58.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 7.5e-10 66.6 51 62.7
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 7.5e-10 66.6 51 58.8
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 9.8e-10 66.2 51 60.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 9.8e-10 66.2 51 58.8
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.3e-09 65.9 51 60.8
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 1.3e-09 65.9 51 58.8
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.3e-09 65.9 53 60.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.7e-09 65.5 47 63.8
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 1.7e-09 65.5 53 60.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 54.9
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 2.2e-09 65.1 50 56.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 56.9
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 60.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 60.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 60.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 60.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 62.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 2.2e-09 65.1 51 60.8
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.9e-09 64.7 51 62.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.9e-09 64.7 51 60.8
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 3.7e-09 64.3 51 60.8
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 4.9e-09 63.9 51 56.9
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 6.4e-09 63.5 51 56.9
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 8.3e-09 63.2 50 58.0
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.3e-09 63.2 53 58.5
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 1.1e-08 62.8 51 60.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.4e-08 62.4 52 55.8
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.4e-08 62.4 51 54.9
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.2e-07 59.3 49 55.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 6.0e-07 57.0 51 54.9
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.9e-06 54.3 51 52.9
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 6.6e-06 53.5 51 51.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 8.6e-06 53.1 51 51.0


User provided reference genes

Program Settings