Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.9e-88 329.3 187 100.0
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 3.2e-35 152.5 149 64.4
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 5.6e-32 141.7 89 82.0
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.8e-30 136.7 167 54.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 2.3e-30 136.3 166 57.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.3e-30 136.3 166 56.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 8.9e-30 134.4 170 54.7
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 7.5e-29 131.3 170 53.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 7.5e-29 131.3 169 53.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.3e-28 130.6 170 52.9
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.9e-27 126.7 170 50.6
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.4e-27 126.3 171 53.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 5.4e-27 125.2 170 50.0
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 7.8e-26 121.3 180 48.3
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 8.6e-25 117.9 180 53.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 4.3e-24 115.5 171 48.5
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.8e-23 112.8 175 50.3
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.1e-22 110.9 171 48.5
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.4e-22 110.5 173 48.0
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.8e-22 110.2 172 47.7
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 2.3e-22 109.8 165 49.1
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 2.3e-22 109.8 171 46.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.3e-22 109.8 174 50.0
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 4.0e-22 109.0 170 48.2
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.4e-21 105.5 145 50.3
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 4.4e-21 105.5 171 49.7
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 5.8e-21 105.1 166 45.8
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.9e-20 102.8 160 45.6
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.9e-20 102.8 174 46.6
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.9e-20 102.1 157 47.1
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.1e-19 100.9 172 45.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.4e-19 100.5 159 48.4
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.9e-19 100.1 170 44.7
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.9e-19 100.1 174 43.7
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.4e-19 99.8 171 43.9
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 5.4e-19 98.6 180 43.9
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 7.1e-19 98.2 171 46.8
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.2e-19 97.8 158 44.3
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 9.2e-19 97.8 171 43.9
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.1e-18 96.7 167 43.7
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.3e-17 93.2 166 45.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.3e-17 93.2 166 45.2
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.0e-17 92.8 171 43.9
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 8.6e-17 91.3 167 43.7
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 8.6e-17 91.3 164 42.1
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.9e-16 90.1 156 46.2
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.3e-16 89.4 163 42.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.3e-16 89.4 171 43.3
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 7.3e-16 88.2 164 45.7
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.3e-16 88.2 168 41.1
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.5e-16 87.8 171 43.3
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.2e-15 87.4 140 48.6
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.2e-15 87.4 166 41.0
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-15 87.4 160 41.9
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-15 87.0 167 42.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.8e-15 86.3 165 46.1
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.6e-15 85.9 154 44.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.7e-15 85.5 164 43.3
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.7e-15 85.5 167 43.1
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.7e-15 85.5 157 42.0
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 6.2e-15 85.1 153 44.4
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 8.1e-15 84.7 205 42.9
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-14 84.0 153 43.8
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.4e-14 84.0 153 43.8
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.8e-14 83.6 170 42.9
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.8e-14 83.6 167 40.7
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 4.0e-14 82.4 156 44.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 4.0e-14 82.4 156 39.1
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.2e-14 82.0 175 42.9
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 6.8e-14 81.6 154 42.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 6.8e-14 81.6 155 43.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 8.9e-14 81.3 164 40.9
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 8.9e-14 81.3 153 43.1
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 8.9e-14 81.3 153 43.1
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.2e-13 80.9 164 42.7
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-13 80.5 153 43.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.5e-13 80.5 193 39.9
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-13 80.5 167 43.7
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.0e-13 80.1 170 39.4
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.6e-13 79.7 167 41.3
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.6e-13 79.7 162 42.0
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 3.4e-13 79.3 167 41.3
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 4.4e-13 79.0 168 37.5
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.4e-13 79.0 177 40.1
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.4e-13 79.0 177 39.0
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 7.6e-13 78.2 162 40.7
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 9.9e-13 77.8 162 41.4
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.3e-12 77.4 177 38.4
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.7e-12 77.0 106 51.9
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-12 77.0 177 40.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.2e-12 76.6 163 40.5
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.9e-12 76.3 177 39.5
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.9e-12 76.3 165 40.6
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.9e-12 76.3 167 40.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.1e-11 74.3 168 39.3
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-11 74.3 161 41.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.1e-11 74.3 133 43.6
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.1e-11 74.3 177 39.0
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.4e-11 73.9 159 41.5
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-11 73.9 156 41.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-11 73.6 161 41.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 4.1e-11 72.4 170 41.8
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 7.1e-11 71.6 191 36.1
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 9.2e-11 71.2 188 37.2
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 9.2e-11 71.2 188 37.2
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.2e-10 70.9 164 39.6
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.2e-10 70.9 148 41.9
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.6e-10 70.5 176 36.4
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.1e-10 70.1 164 36.6
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 2.1e-10 70.1 121 43.0
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.7e-10 69.7 136 43.4
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.7e-10 69.7 132 38.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.7e-10 69.7 170 37.6
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.5e-10 69.3 174 36.8
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.7e-09 67.0 148 37.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-09 67.0 151 40.4
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-09 66.6 151 40.4
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 2.3e-09 66.6 151 40.4
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 5.1e-09 65.5 151 40.4
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 5.1e-09 65.5 151 40.4
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.1e-09 65.5 154 38.3
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 5.1e-09 65.5 162 37.0
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 6.6e-09 65.1 156 38.5
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 6.6e-09 65.1 166 38.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 8.6e-09 64.7 167 37.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.5e-08 63.9 176 34.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.5e-08 63.9 164 37.2
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.3e-08 62.4 165 38.2
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.8e-07 59.7 91 48.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 2.8e-07 59.7 165 37.6
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.8e-07 59.7 125 42.4
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 6.2e-07 58.5 156 39.1
Lalb_Chr16g0388071 Lupinus albus HOM05D003644 ORTHO05D004305 8.1e-07 58.2 52 61.5
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.1e-06 57.8 153 35.3
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.4e-06 57.4 127 35.4
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.4e-06 57.4 143 34.3
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 5.2e-06 55.5 155 34.2
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 5.2e-06 55.5 178 37.6


User provided reference genes

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