Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 4.4e-117 425.2 329 100.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.2e-101 374.0 330 75.5
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.0e-101 373.2 326 82.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.0e-101 373.2 326 82.8
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 3.2e-91 339.3 329 76.6
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 1.0e-89 334.3 326 66.9
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.8e-87 326.2 315 72.1
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 8.2e-87 324.7 329 70.2
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 8.4e-84 314.7 320 70.0
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.6e-82 310.5 311 75.9
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 7.9e-82 308.1 326 66.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 2.3e-81 306.6 338 69.2
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 2.3e-81 306.6 328 66.5
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.5e-80 303.9 316 72.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.2e-79 300.1 328 68.0
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.1e-78 297.7 338 68.6
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.1e-78 296.2 322 63.4
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.2e-74 284.3 318 62.9
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-73 280.4 319 71.2
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.9e-72 276.9 314 75.2
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.3e-71 274.2 318 66.7
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.8e-71 273.1 312 75.0
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.4e-70 270.8 328 64.3
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.4e-70 270.0 312 62.8
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.1e-70 269.6 318 61.0
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 4.1e-70 269.2 316 59.5
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 6.9e-70 268.5 327 60.2
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 9.1e-70 268.1 329 60.5
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-69 267.3 318 61.6
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.0e-69 266.9 328 59.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.6e-69 266.5 329 60.2
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.6e-69 266.5 329 60.2
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.6e-69 266.5 324 59.3
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 3.4e-69 266.2 318 60.4
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 4.5e-69 265.8 329 59.6
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 5.9e-69 265.4 312 62.2
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 7.7e-69 265.0 329 59.9
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.3e-68 264.2 324 62.0
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-68 263.8 329 59.9
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 6.5e-68 261.9 328 58.5
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 8.5e-68 261.5 318 60.7
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 8.5e-68 261.5 318 60.7
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.4e-67 260.8 315 61.9
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 2.5e-67 260.0 356 49.2
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.5e-67 260.0 322 62.4
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.5e-67 260.0 356 54.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 7.2e-67 258.5 320 59.1
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 9.4e-67 258.1 329 59.0
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-66 257.7 318 60.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 3.6e-66 256.1 334 58.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.4e-64 249.2 303 62.4
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 5.7e-64 248.8 321 58.3
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 7.4e-64 248.4 328 56.4
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 7.4e-64 248.4 328 56.4
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 7.4e-64 248.4 328 60.4
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 7.4e-64 248.4 319 55.2
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.3e-63 247.7 322 58.7
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.8e-63 246.5 296 67.6
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 3.7e-63 246.1 331 58.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.4e-62 244.2 326 59.2
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.1e-62 241.5 323 58.8
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.0e-61 240.4 301 69.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.6e-61 240.0 355 51.3
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.4e-61 239.6 319 57.4
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 3.4e-61 239.6 318 58.5
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 5.9e-61 238.8 338 55.9
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 7.7e-61 238.4 317 59.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.2e-60 236.9 317 59.0
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 3.8e-60 236.1 322 57.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 5.5e-59 232.3 318 57.9
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.2e-58 231.1 314 57.6
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-58 230.7 341 55.4
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.7e-58 229.9 330 55.2
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.6e-58 229.6 324 58.6
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 3.6e-58 229.6 341 54.5
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 3.6e-58 229.6 321 58.6
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 6.1e-58 228.8 295 74.9
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 6.1e-58 228.8 319 57.1
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 8.0e-58 228.4 292 60.6
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 8.0e-58 228.4 323 57.0
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.0e-57 228.0 315 58.4
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.4e-57 227.6 319 57.1
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.4e-57 227.6 319 57.1
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-57 226.9 319 56.4
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.3e-57 226.9 314 65.6
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.0e-57 226.5 323 56.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.9e-57 226.1 316 57.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.9e-57 226.1 316 57.0
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.9e-57 226.1 314 57.0
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.1e-56 224.6 294 60.5
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-56 224.2 318 56.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.0e-56 223.8 318 55.7
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 4.4e-56 222.6 318 55.3
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.3e-55 221.1 311 57.9
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.8e-55 219.9 321 56.1
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.1e-54 218.0 319 56.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.1e-54 218.0 332 56.6
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.4e-54 216.9 323 55.7
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 4.1e-54 216.1 328 54.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 5.3e-54 215.7 332 53.9
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 9.1e-54 214.9 316 55.4
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.2e-53 214.5 323 56.7
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 4.5e-53 212.6 319 55.5
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 3.8e-52 209.5 310 64.2
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 8.5e-52 208.4 212 58.5
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.5e-51 206.8 230 55.2
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.0e-49 201.4 300 57.7
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.4e-49 201.1 301 57.1
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 5.2e-49 199.1 299 56.9
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.3e-47 194.5 310 53.2
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 2.8e-47 193.4 328 51.2
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 4.8e-47 192.6 235 52.8
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.1e-46 191.4 303 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 3.1e-46 189.9 313 60.1
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.5e-45 186.4 290 55.9
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 4.5e-45 186.0 292 56.2
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.5e-43 181.0 310 52.9
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.5e-43 179.1 306 58.2
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 7.2e-43 178.7 227 50.7
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.6e-42 176.4 289 54.3
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 7.5e-40 168.7 180 57.8
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 9.8e-40 168.3 192 50.0
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.3e-39 167.9 306 49.7
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 4.8e-39 166.0 192 49.5
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 4.5e-37 159.5 161 55.3
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 4.5e-37 159.5 312 52.9
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 4.2e-35 152.9 129 63.6
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 2.8e-34 150.2 165 57.0
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 8.0e-34 148.7 180 53.3
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 8.0e-34 148.7 129 63.6
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.0e-33 148.3 119 66.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-33 147.5 227 48.0
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 6.8e-33 145.6 147 59.2
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 7.5e-32 142.1 190 47.4
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.8e-32 141.7 120 62.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-31 140.6 202 45.0
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 4.1e-30 136.3 180 50.6
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-29 134.4 192 44.8
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.3e-27 126.7 151 48.3
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 4.3e-27 126.3 132 56.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.3e-27 126.3 163 71.2
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 2.1e-26 124.0 168 47.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 3.6e-26 123.2 308 46.8
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.8e-25 120.9 210 62.4
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 5.2e-25 119.4 308 41.6
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 5.2e-25 119.4 212 59.4
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 7.0e-22 109.0 134 54.5
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-21 107.8 152 43.4
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 2.3e-17 94.0 146 43.2
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 4.4e-16 89.7 54 77.8
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.2e-14 83.6 48 79.2
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.1e-14 83.2 84 54.8
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.1e-14 83.2 84 54.8
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.2e-14 82.0 87 54.0
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-12 78.6 47 74.5
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-12 78.6 47 74.5
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-10 71.2 80 51.2
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 3.1e-09 67.0 122 41.0
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.9e-09 65.5 84 50.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.5e-08 64.7 47 66.0
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.0e-08 64.3 67 53.7
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 7.5e-08 62.4 67 52.2
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-07 60.1 39 64.1
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 7.1e-06 55.8 138 37.7
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 7.1e-06 55.8 85 41.2


User provided reference genes

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