Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 6.7e-48 193.7 101 100.0
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 1.5e-39 166.0 90 94.4
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 1.3e-30 136.3 87 83.9
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 3.8e-27 124.8 76 86.8
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 3.6e-17 91.7 80 67.5
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 1.0e-16 90.1 78 60.3
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 2.0e-15 85.9 77 64.9
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 2.6e-15 85.5 82 64.6
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 4.4e-15 84.7 80 63.8
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 1.3e-14 83.2 80 53.8
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 1.3e-14 83.2 78 62.8
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.8e-14 82.0 80 63.8
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 2.8e-14 82.0 80 63.8
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.7e-14 81.6 79 60.8
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 4.8e-14 81.3 91 56.0
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 8.2e-14 80.5 75 64.0
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.8e-13 79.3 78 61.5
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 1.8e-13 79.3 85 57.6
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 2.4e-13 79.0 81 54.3
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 2.4e-13 79.0 77 62.3
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 2.4e-13 79.0 78 64.1
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 3.1e-13 78.6 73 64.4
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 3.1e-13 78.6 77 62.3
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 5.3e-13 77.8 78 61.5
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 5.3e-13 77.8 80 58.8
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.6e-12 76.3 78 60.3
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 1.6e-12 76.3 64 65.6
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 2.0e-12 75.9 78 55.1
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 7.7e-12 73.9 79 55.7
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.3e-11 73.2 79 53.2
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 2.9e-11 72.0 79 57.0
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 5.0e-11 71.2 78 55.1
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 1.1e-10 70.1 79 54.4
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 1.5e-10 69.7 79 49.4
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 2.5e-10 68.9 80 51.2
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 3.2e-10 68.6 82 50.0
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.2e-10 68.6 81 51.9
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.2e-10 68.6 77 50.6
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 3.2e-10 68.6 79 53.2
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 5.5e-10 67.8 49 69.4
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 5.5e-10 67.8 81 50.6
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 7.2e-10 67.4 78 51.3
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 7.2e-10 67.4 78 51.3
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 1.2e-09 66.6 78 52.6
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 1.2e-09 66.6 80 50.0
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 1.2e-09 66.6 79 54.4
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 1.2e-09 66.6 72 52.8
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 1.2e-09 66.6 79 54.4
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 1.2e-09 66.6 78 52.6
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 1.6e-09 66.2 44 65.9
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 1.6e-09 66.2 74 52.7
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 2.1e-09 65.9 83 51.8
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 2.1e-09 65.9 36 86.1
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 2.7e-09 65.5 79 49.4
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 3.6e-09 65.1 71 57.7
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 3.6e-09 65.1 82 51.2
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 4.7e-09 64.7 80 47.5
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 2.3e-08 62.4 69 49.3
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 2.3e-08 62.4 69 49.3
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 6.7e-08 60.8 73 50.7
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 8.8e-08 60.5 65 47.7
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 5.7e-07 57.8 78 47.4
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 7.5e-07 57.4 63 54.0
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 1.3e-06 56.6 60 53.3
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 4.8e-06 54.7 49 59.2
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 4.8e-06 54.7 77 45.5


User provided reference genes

Program Settings