Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 5.9e-107 391.0 208 100.0
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.7e-96 355.5 204 91.7
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.4e-95 353.2 208 89.9
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 4.8e-93 344.7 208 88.5
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.1e-89 333.6 207 84.1
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 6.1e-88 327.8 207 82.6
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.6e-86 322.4 207 81.2
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 9.7e-86 320.5 207 81.2
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.8e-85 318.9 209 83.7
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 6.1e-80 301.2 202 79.2
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 4.5e-75 285.0 208 72.6
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 2.9e-74 282.3 208 72.6
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 9.4e-73 277.3 195 74.4
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.1e-72 276.2 208 71.6
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.0e-71 273.9 201 74.1
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 2.3e-71 272.7 205 70.7
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 4.0e-71 271.9 207 69.6
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.6e-70 269.2 208 73.1
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 9.8e-70 267.3 208 69.2
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 9.8e-70 267.3 204 70.1
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.2e-69 266.2 206 68.9
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.3e-69 264.2 198 70.7
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.4e-68 263.5 209 68.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.8e-68 263.1 203 67.5
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.4e-68 262.7 209 68.4
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.1e-68 262.3 207 69.1
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.4e-68 261.5 199 72.9
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 7.0e-68 261.2 205 68.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 7.0e-68 261.2 207 66.2
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.2e-67 260.4 191 71.7
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.2e-67 260.4 186 71.5
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.6e-67 260.0 197 70.1
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-67 260.0 208 65.9
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.6e-67 260.0 208 70.7
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 4.5e-67 258.5 210 68.6
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.5e-67 258.5 185 71.4
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.0e-66 257.3 198 69.7
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 3.8e-66 255.4 208 65.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.8e-66 255.4 208 65.4
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 3.8e-66 255.4 198 69.2
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.0e-66 255.0 185 72.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 6.6e-66 254.6 194 68.6
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.1e-65 253.8 209 67.0
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.1e-65 253.8 208 63.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 5.5e-65 251.5 205 66.8
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 9.5e-65 250.8 190 70.0
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.6e-64 250.0 202 68.3
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.1e-64 249.6 197 67.0
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 8.0e-64 247.7 207 67.1
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.3e-63 246.1 191 66.0
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 3.0e-63 245.7 208 66.8
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 3.0e-63 245.7 188 71.3
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 4.4e-62 241.9 182 68.7
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 4.4e-62 241.9 224 61.6
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 5.7e-62 241.5 194 66.0
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.7e-61 238.8 193 66.8
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 4.9e-61 238.4 216 63.0
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 8.3e-61 237.7 228 57.0
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.0e-59 233.0 194 66.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.7e-59 232.6 207 61.8
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 7.8e-59 231.1 186 64.5
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.7e-58 229.9 204 60.8
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 2.3e-58 229.6 187 63.6
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 3.8e-58 228.8 205 61.0
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 3.8e-58 228.8 208 59.6
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 5.0e-58 228.4 203 59.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 5.0e-58 228.4 208 62.5
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.0e-58 228.4 192 64.1
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 8.6e-58 227.6 205 60.5
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.1e-57 227.3 188 63.3
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.1e-57 227.3 188 63.3
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 3.3e-57 225.7 196 63.8
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 7.3e-57 224.6 187 62.6
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 3.6e-56 222.2 211 61.1
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.0e-55 218.8 174 63.8
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.5e-54 216.9 198 61.1
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 1.5e-54 216.9 189 64.0
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.9e-53 212.6 184 60.9
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 2.9e-53 212.6 194 59.3
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 4.9e-53 211.8 202 57.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.9e-53 211.8 197 59.4
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.9e-53 211.8 208 57.7
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 6.4e-53 211.5 213 57.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 6.4e-53 211.5 163 64.4
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 8.3e-53 211.1 201 58.7
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 8.3e-53 211.1 188 60.6
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 8.3e-53 211.1 188 60.6
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 8.3e-53 211.1 188 60.6
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-52 210.3 190 60.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 2.4e-52 209.5 195 59.5
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 2.4e-52 209.5 182 60.4
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 2.4e-52 209.5 148 69.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.2e-52 209.1 208 57.2
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.2e-51 207.2 196 59.7
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.2e-51 207.2 199 59.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.7e-51 206.1 248 51.6
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.6e-51 205.3 208 57.2
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.9e-50 202.2 146 73.3
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 3.9e-50 202.2 183 57.9
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 3.9e-50 202.2 200 58.5
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 8.6e-50 201.1 146 73.3
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.1e-49 200.7 164 63.4
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 4.3e-49 198.7 136 76.5
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.5e-49 197.6 139 72.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.1e-47 194.1 126 77.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.4e-47 193.7 141 70.2
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.5e-46 190.3 199 51.8
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.0e-44 181.4 209 53.6
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.0e-42 177.6 183 54.1
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 5.1e-42 175.3 138 65.9
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.5e-41 172.9 151 66.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 7.3e-41 171.4 136 69.1
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.6e-40 170.2 114 73.7
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.1e-36 157.5 115 63.5
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 9.5e-33 144.4 122 65.6
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.5e-30 137.1 124 57.3
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.4e-30 135.6 113 62.8
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 4.4e-30 135.6 84 82.1
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.9e-28 130.2 83 78.3
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.2e-28 129.0 83 77.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.6e-27 125.6 83 75.9
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.7e-26 123.6 99 65.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 6.6e-26 121.7 184 37.5
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.6e-24 117.1 119 51.3
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.7e-24 115.5 206 37.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 5.3e-23 112.1 148 45.3
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.5e-22 110.5 108 54.6
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.3e-21 107.5 189 36.5
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 3.8e-21 105.9 69 75.4
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 4.9e-21 105.5 66 83.3
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 1.4e-20 104.0 151 45.0
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.2e-19 100.9 78 65.4
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-18 97.4 64 71.9
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.1e-16 90.1 108 40.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 6.4e-13 78.6 142 35.9
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.7e-08 62.8 82 45.1
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 2.6e-06 56.6 63 52.4


User provided reference genes

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