Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.6e-123 446.0 218 100.0
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.4e-106 389.8 218 85.3
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.1e-103 380.2 218 83.9
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.1e-99 365.9 213 82.2
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.8e-98 362.8 213 81.7
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.8e-98 362.8 213 81.2
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.0e-98 361.7 213 81.2
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 4.0e-98 361.7 213 81.2
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 5.8e-97 357.8 210 80.5
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 6.4e-96 354.4 218 77.5
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.4e-95 352.4 213 78.9
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-94 349.7 218 75.7
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.7e-94 349.0 218 75.7
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.9e-92 342.8 218 74.3
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 6.2e-91 337.8 219 73.1
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.2e-89 333.6 213 73.7
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.5e-89 330.9 219 72.1
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.6e-86 323.2 206 71.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.9e-85 318.5 218 68.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 68.3
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 68.3
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 5.1e-85 318.2 217 69.1
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 6.6e-85 317.8 207 70.5
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 8.6e-85 317.4 210 69.5
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.5e-84 316.6 209 68.9
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.5e-84 316.6 209 69.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.9e-84 316.2 214 69.2
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.5e-84 315.8 215 67.9
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.3e-84 315.5 218 67.9
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 3.3e-84 315.5 217 68.2
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 4.3e-84 315.1 217 67.3
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 9.5e-84 313.9 218 67.4
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 9.5e-84 313.9 217 68.7
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.8e-83 312.4 216 68.1
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 4.7e-83 311.6 209 68.9
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 6.2e-83 311.2 218 66.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 8.1e-83 310.8 210 68.6
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 8.1e-83 310.8 207 67.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.1e-82 310.5 210 68.6
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.1e-82 310.5 218 66.5
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-82 310.5 214 67.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.1e-82 310.5 212 68.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.4e-82 310.1 212 68.4
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.8e-82 309.7 207 67.1
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.3e-82 309.3 218 66.5
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 2.3e-82 309.3 212 66.0
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.1e-82 308.9 203 71.4
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.1e-82 308.9 218 66.5
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 4.0e-82 308.5 207 70.0
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 4.0e-82 308.5 217 65.4
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 4.0e-82 308.5 217 63.6
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 5.2e-82 308.1 208 69.2
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 8.9e-82 307.4 218 65.1
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.5e-81 306.6 211 68.2
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.6e-81 305.8 218 67.9
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 5.8e-81 304.7 217 65.4
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 5.8e-81 304.7 218 66.5
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 9.9e-81 303.9 212 64.2
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 9.9e-81 303.9 217 63.1
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.7e-80 303.1 212 63.7
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 2.2e-80 302.8 215 66.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 3.8e-80 302.0 214 65.0
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-79 300.4 212 65.6
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.2e-79 298.9 210 65.2
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 4.6e-78 295.0 218 64.7
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 4.6e-78 295.0 211 66.8
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 6.0e-78 294.7 218 65.1
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 6.0e-78 294.7 218 65.1
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 6.0e-78 294.7 218 65.1
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 7.8e-78 294.3 218 64.7
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 7.8e-78 294.3 217 63.6
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 7.8e-78 294.3 218 64.7
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.3e-77 293.5 218 64.2
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.9e-77 292.0 218 64.7
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.1e-77 291.6 211 63.5
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.6e-77 290.8 210 63.8
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.1e-76 290.4 213 64.3
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.1e-76 290.4 218 63.8
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.5e-76 290.0 215 64.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.5e-76 290.0 210 65.2
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.3e-76 288.9 209 65.1
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 5.6e-76 288.1 218 63.8
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 7.3e-76 287.7 210 65.2
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 9.6e-76 287.3 218 62.8
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 2.1e-75 286.2 210 64.8
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 4.0e-74 282.0 214 61.2
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.0e-74 282.0 248 55.2
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 5.2e-74 281.6 210 64.3
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 2.0e-73 279.6 210 63.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 5.8e-73 278.1 208 63.0
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.4e-72 274.2 225 58.7
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 2.4e-71 272.7 191 63.4
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 9.3e-71 270.8 203 64.0
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.2e-70 270.4 211 61.1
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 3.9e-69 265.4 206 60.2
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 5.1e-69 265.0 206 61.2
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 9.6e-68 260.8 202 59.9
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.6e-67 260.0 208 58.7
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 2.8e-67 259.2 216 57.9
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 3.1e-66 255.8 214 58.9
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.1e-66 255.8 213 54.5
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.0e-65 253.1 204 59.8
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 3.4e-65 252.3 174 66.1
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.4e-65 252.3 185 63.8
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.0e-62 241.5 198 58.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.3e-61 240.4 204 53.4
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.3e-60 235.7 204 56.4
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.4e-60 234.6 206 51.5
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-59 233.4 198 57.1
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.1e-58 229.2 159 66.7
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.6e-57 226.1 211 49.8
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 5.8e-57 224.9 212 53.8
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 8.4e-56 221.1 212 52.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.4e-55 219.5 138 69.6
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.2e-54 217.2 145 66.2
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-53 213.8 222 50.5
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.3e-53 213.0 196 54.1
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.6e-52 208.4 186 52.7
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.6e-51 206.8 137 67.2
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.0e-49 199.9 131 67.9
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.5e-47 191.8 171 55.0
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-46 189.5 126 66.7
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.7e-46 189.5 231 47.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 6.7e-45 184.9 199 46.7
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.5e-44 183.0 211 44.1
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.7e-43 179.1 180 49.4
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-39 167.2 207 45.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.7e-35 152.5 109 67.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.0e-33 146.7 110 64.5
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.4e-28 128.3 204 35.3
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 3.4e-25 119.4 75 66.7
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 9.4e-23 111.3 209 36.4
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 2.7e-22 109.8 230 31.7
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.0e-21 106.3 138 43.5
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.8e-19 99.8 71 67.6
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 4.1e-18 95.9 77 61.0
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.0e-17 93.6 65 63.1
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.7e-17 91.7 212 30.7
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.7e-16 90.5 111 42.3
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.7e-16 90.5 111 42.3
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-15 87.8 111 40.5
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 2.5e-15 86.7 184 32.1
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.1e-14 83.6 212 26.9
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.6e-14 82.8 84 51.2
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 4.0e-13 79.3 46 80.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.8e-11 73.2 49 57.1
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.8e-10 70.5 201 24.9
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 9.1e-10 68.2 40 75.0
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-09 67.8 49 57.1
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 5.9e-09 65.5 187 28.9
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.9e-09 65.5 108 37.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.7e-08 63.9 216 25.0
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 2.1e-06 57.0 84 45.2
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 3.6e-06 56.2 60 51.7
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 6.1e-06 55.5 84 44.0


User provided reference genes

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