Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 9.3e-56 219.9 108 100.0
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.8e-46 189.1 108 85.2
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.5e-45 186.0 108 87.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 4.3e-45 184.5 108 80.6
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.4e-43 179.5 108 78.7
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.6e-42 175.3 111 77.5
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.8e-41 171.4 108 76.9
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.9e-40 169.1 109 78.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.2e-39 166.4 108 75.9
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 3.9e-38 161.4 108 70.4
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 6.7e-38 160.6 107 73.8
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.7e-37 157.5 108 69.4
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.3e-36 156.4 108 65.7
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.3e-36 156.4 108 65.7
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 64.8
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 6.3e-36 154.1 108 64.8
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 69.4
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 66.7
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 66.7
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 67.6
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 65.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 63.9
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 63.9
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 65.7
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 67.6
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 64.8
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 4.5e-34 147.9 108 64.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 67.6
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 65.7
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 64.8
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.0e-33 146.7 109 61.5
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 65.7
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 65.7
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 66.7
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 2.9e-33 145.2 109 66.1
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 64.8
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 63.0
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 8.5e-33 143.7 109 65.1
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 8.5e-33 143.7 105 66.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.4e-32 142.9 109 66.1
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 1.9e-32 142.5 107 60.7
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.9
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 62.0
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 64.8
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 61.1
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 63.0
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 63.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 7.2e-32 140.6 108 59.3
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 63.9
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 59.3
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.1e-31 139.0 109 62.4
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 58.3
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 58.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 62.0
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 62.0
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 62.0
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 56.5
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 7.9e-31 137.1 109 62.4
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 57.4
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 57.4
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 57.4
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 57.4
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 62.0
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 56.5
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 62.0
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 60.2
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 62.0
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.9e-30 134.8 109 62.4
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 58.3
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 57.4
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 55.6
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 63.9
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 59.3
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 60.2
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 8.8e-30 133.7 108 56.5
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 60.2
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 59.3
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 61.1
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 55.6
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 55.6
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 55.6
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 59.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 55.6
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 58.3
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 56.5
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 7.4e-29 130.6 108 57.4
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 7.4e-29 130.6 107 60.7
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 7.4e-29 130.6 108 56.5
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 56.5
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 58.3
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 55.6
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 55.6
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.8e-28 128.6 109 55.0
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 4.8e-28 127.9 108 56.5
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 6.3e-28 127.5 108 56.5
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.4e-27 126.3 105 57.1
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 58.3
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 54.6
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 54.6
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 55.6
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 57.4
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 55.6
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 57.4
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 53.7
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 54.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 53.7
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.9e-26 120.9 108 53.7
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 5.9e-26 120.9 101 60.4
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.0e-25 120.2 87 71.3
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 55.6
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.3e-25 119.8 90 64.4
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.7e-25 119.4 84 69.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 2.9e-25 118.6 87 66.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 2.9e-25 118.6 91 57.1
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 52.8
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 3.8e-25 118.2 87 60.9
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 5.0e-25 117.9 86 65.1
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.0e-25 117.9 90 65.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 5.0e-25 117.9 99 55.6
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.1e-24 116.7 108 59.3
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-24 116.3 86 65.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 9.4e-24 113.6 96 54.2
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 2.7e-23 112.1 108 47.2
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.1e-23 110.9 94 58.5
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.4e-22 109.8 92 55.4
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.8e-22 109.4 95 56.8
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.3e-22 109.0 84 56.0
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 2.3e-22 109.0 84 64.3
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 3.0e-22 108.6 108 51.9
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.0e-22 108.6 87 59.8
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.1e-22 107.8 87 59.8
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 8.8e-22 107.1 71 67.6
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 47.2
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 2.0e-21 105.9 108 49.1
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.3e-21 105.1 88 53.4
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 3.3e-21 105.1 108 48.1
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.7e-20 101.7 84 56.0
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.7e-20 101.7 84 56.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.3e-20 100.9 84 54.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 3.1e-19 98.6 60 73.3
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.4e-18 95.1 85 54.1
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 7.7e-18 94.0 102 52.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.0e-17 93.6 108 45.4
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 3.8e-17 91.7 106 39.6
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 6.5e-17 90.9 94 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.5e-17 90.5 100 44.0
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-16 89.7 66 68.2
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.9e-16 89.4 100 44.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 9.4e-16 87.0 85 52.9
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.0e-14 82.0 66 62.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 5.2e-14 81.3 83 49.4
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 6.3e-12 74.3 109 37.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 6.3e-12 74.3 82 48.8
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 3.1e-11 72.0 111 40.5
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.0e-09 67.0 109 37.6
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 6.5e-09 64.3 66 48.5
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 8.8e-06 53.9 41 53.7


User provided reference genes

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