Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.6e-263 912.5 590 100.0
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 8.3e-183 644.4 577 78.0
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 7.1e-166 588.2 594 69.0
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 2.4e-161 573.2 583 76.2
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 6.9e-145 518.5 521 60.3
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 3.6e-125 453.0 572 66.3
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.3e-114 417.9 576 59.5
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 3.5e-112 409.8 579 60.3
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 4.5e-112 409.5 586 60.4
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 7.7e-112 408.7 574 60.8
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.8e-97 360.9 596 54.2
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 3.1e-97 360.1 479 61.6
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 5.9e-96 355.9 599 53.6
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 2.3e-95 354.0 576 56.9
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.9e-95 353.6 586 57.2
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 5.0e-95 352.8 465 62.4
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 1.6e-93 347.8 455 62.4
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 2.1e-93 347.4 603 51.1
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 4.7e-93 346.3 577 56.2
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 6.1e-93 345.9 585 53.8
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 4.0e-92 343.2 577 53.7
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 8.9e-92 342.0 460 66.3
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.2e-91 341.7 500 57.6
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 9.8e-91 338.6 610 52.3
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 1.7e-90 337.8 603 51.7
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.7e-90 337.8 574 58.0
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.2e-90 337.4 581 56.1
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 3.7e-90 336.7 580 56.6
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 4.9e-90 336.3 590 54.6
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 8.3e-90 335.5 428 47.7
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 1.8e-89 334.3 573 55.1
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 3.1e-89 333.6 600 51.0
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 5.4e-89 332.8 574 54.9
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 9.2e-89 332.0 431 47.8
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.0e-87 328.6 593 55.3
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.1e-86 325.1 508 60.2
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 3.3e-86 323.6 575 53.6
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 7.3e-86 322.4 572 54.4
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 9.5e-86 322.0 486 58.6
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.4e-84 318.2 581 54.4
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 3.0e-84 317.0 584 51.4
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 6.8e-84 315.8 482 57.1
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 6.8e-84 315.8 355 51.3
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.2e-83 315.1 579 54.4
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.5e-83 314.7 607 53.9
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 3.4e-83 313.5 400 45.8
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 4.4e-83 313.2 547 53.0
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 5.7e-83 312.8 486 61.3
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 9.8e-83 312.0 538 53.5
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 2.2e-82 310.8 547 53.4
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.7e-82 310.1 564 51.8
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.9e-82 309.7 456 58.1
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 8.3e-82 308.9 578 52.2
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 8.3e-82 308.9 604 50.8
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.4e-81 308.1 447 55.9
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 3.2e-81 307.0 515 55.1
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.2e-81 307.0 520 54.0
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 3.2e-81 307.0 492 55.7
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.0e-81 305.8 442 44.6
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.0e-81 305.8 442 44.6
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 2.7e-80 303.9 573 54.8
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.6e-80 303.1 456 57.7
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 4.6e-80 303.1 588 49.5
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 3.9e-79 300.1 352 49.7
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 3.4e-75 287.0 452 60.4
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 6.4e-74 282.7 438 42.5
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 2.4e-73 280.8 449 56.1
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.6e-72 278.1 476 55.5
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 3.5e-72 276.9 451 56.8
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 7.8e-72 275.8 597 48.6
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 6.6e-71 272.7 591 50.3
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 8.6e-71 272.3 478 55.0
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 4.3e-70 270.0 455 57.1
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 9.5e-70 268.9 467 36.6
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 1.6e-69 268.1 600 48.2
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 3.6e-69 266.9 600 46.7
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 6.2e-69 266.2 393 42.5
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 6.2e-69 266.2 596 49.7
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.1e-68 263.8 541 50.1
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 6.8e-68 262.7 520 54.8
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.5e-67 261.5 596 49.7
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 5.8e-67 259.6 461 54.7
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 8.3e-66 255.8 529 52.2
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 1.4e-65 255.0 594 43.8
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 1.9e-65 254.6 552 51.6
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 5.4e-65 253.1 565 51.9
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 7.1e-65 252.7 591 48.9
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 1.3e-63 248.4 533 52.2
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 5.1e-63 246.5 587 47.2
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 6.6e-63 246.1 597 49.6
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.6e-63 246.1 427 36.3
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.5e-62 244.2 533 52.5
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 3.3e-62 243.8 427 36.1
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 6.2e-61 239.6 591 50.3
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 1.1e-60 238.8 532 52.4
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 1.4e-60 238.4 571 49.0
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 3.1e-60 237.3 575 50.3
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 4.0e-60 236.9 571 49.0
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 5.8e-59 233.0 368 40.2
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 3.0e-55 220.7 574 49.5
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 3.0e-55 220.7 574 49.5
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 2.8e-53 214.2 400 37.8
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 4.0e-52 210.3 583 47.7
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 9.0e-52 209.1 315 39.0
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 2.2e-50 204.5 487 47.2
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 6.0e-48 196.4 556 31.7
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 2.0e-43 181.4 271 39.1
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.3e-39 167.9 306 39.9
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 3.0e-39 167.5 301 39.9
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 3.0e-39 167.5 301 39.9
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.1e-38 165.6 259 39.8
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 1.5e-38 165.2 430 46.0
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.4e-38 162.9 295 38.6
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 7.4e-38 162.9 303 39.3
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.3e-37 162.2 315 35.9
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 2.2e-34 151.4 292 32.9
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 8.4e-34 149.4 275 38.2
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.1e-32 144.8 369 31.4
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 3.8e-26 124.0 167 43.1
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 4.9e-26 123.6 75 81.3
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 2.1e-24 118.2 290 34.5
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-19 102.1 201 37.8
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 5.0e-18 97.1 197 34.5
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.1e-17 95.9 371 28.6
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 2.3e-15 88.2 155 39.4
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 5.3e-12 77.0 54 70.4
Medtr3g108743 Medicago truncatula HOM05D030372 ORTHO05D025854 3.4e-11 74.3 54 63.0
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 2.2e-10 71.6 126 37.3
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.2e-10 71.6 49 73.5
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 3.8e-10 70.9 63 50.8
Medtr8g080260 Medicago truncatula HOM05D004670 ORTHO05D014137 1.9e-09 68.6 114 41.2
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 1.8e-07 62.0 54 64.8
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 8.8e-07 59.7 166 28.3
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 8.8e-07 59.7 166 28.3
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 1.5e-06 58.9 47 61.7
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 2.0e-06 58.5 110 30.9


User provided reference genes

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