Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 1.1e-245 852.8 405 100.0
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 1.9e-242 842.0 406 98.8
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 7.1e-242 840.1 405 98.0
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 1.1e-239 832.8 405 97.8
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 1.1e-237 826.2 405 96.3
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 2.0e-236 822.0 405 95.6
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 2.2e-235 818.5 405 94.8
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 5.5e-234 813.9 404 94.3
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.1e-231 806.2 410 93.9
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 5.6e-231 803.9 405 93.3
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 3.2e-226 788.1 434 87.1
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 1.3e-224 782.7 405 90.1
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 2.3e-224 781.9 405 90.6
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.5e-223 779.2 405 90.4
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.5e-223 779.2 405 90.4
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.5e-223 778.5 405 90.1
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 2.8e-222 775.0 404 89.4
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.1e-221 773.1 404 90.1
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 1.8e-221 772.3 404 88.6
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 4.1e-221 771.2 405 89.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 3.4e-220 768.1 405 89.1
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 5.9e-220 767.3 405 87.9
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.9e-219 765.0 405 88.6
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 8.5e-219 763.5 419 85.2
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.9e-218 762.3 403 89.6
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 3.2e-218 761.5 406 88.9
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 4.2e-218 761.1 402 89.1
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 7.2e-218 760.4 404 87.9
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 7.9e-217 756.9 403 87.3
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 7.9e-217 756.9 403 87.6
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 7.9e-217 756.9 404 87.4
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 1.8e-216 755.7 405 87.7
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.3e-216 755.4 403 87.1
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 5.1e-216 754.2 403 86.8
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 8.7e-216 753.4 405 86.4
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 1.9e-215 752.3 405 86.4
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.9e-215 752.3 405 86.2
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 4.3e-215 751.1 416 85.8
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 5.7e-215 750.7 404 86.4
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 3.7e-214 748.0 404 87.1
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 4.8e-214 747.7 410 86.6
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 6.3e-214 747.3 403 86.6
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 3.1e-213 745.0 404 86.1
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.1e-213 744.6 403 87.6
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 5.3e-213 744.2 404 85.9
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 5.3e-213 744.2 392 89.8
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 6.9e-213 743.8 397 86.1
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 2.0e-212 742.3 390 87.9
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 2.6e-212 741.9 392 88.5
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 5.9e-212 740.7 406 86.5
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 5.9e-212 740.7 411 84.9
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 1.7e-211 739.2 404 85.1
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 5.0e-211 737.6 404 85.6
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 5.0e-211 737.6 404 85.6
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.4e-210 736.1 403 84.9
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.9e-210 735.7 404 84.9
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.9e-210 735.7 397 86.1
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 4.2e-210 734.6 392 87.5
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 4.2e-210 734.6 405 85.9
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 5.5e-210 734.2 404 86.1
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 9.4e-210 733.4 434 80.9
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.1e-209 732.3 404 85.1
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.7e-209 731.9 398 86.2
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 3.6e-209 731.5 404 85.4
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 4.6e-209 731.1 405 83.5
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 7.9e-209 730.3 414 83.1
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 1.8e-208 729.2 405 84.4
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 3.0e-208 728.4 405 82.7
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 3.9e-208 728.0 391 86.4
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 5.1e-208 727.6 405 83.7
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 8.8e-208 726.9 405 83.2
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.4e-207 724.5 403 84.9
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 5.7e-207 724.2 405 82.5
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.8e-206 721.1 403 84.4
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 8.2e-206 720.3 392 85.2
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.4e-205 718.8 405 84.0
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 2.6e-204 715.3 403 84.9
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 2.2e-203 712.2 404 82.2
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 3.8e-203 711.4 405 81.7
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 4.2e-202 708.0 407 82.3
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 1.2e-201 706.4 416 80.8
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.7e-201 705.3 399 83.2
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 2.3e-200 702.2 401 82.5
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 7.4e-199 697.2 388 82.2
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 7.4e-199 697.2 388 82.2
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 7.4e-199 697.2 405 79.8
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 2.8e-198 695.3 422 80.1
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 8.2e-198 693.7 402 81.6
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.2e-196 689.9 390 81.8
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.6e-196 688.7 389 83.3
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 5.5e-194 681.0 368 86.7
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 2.3e-192 675.6 404 79.5
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.0e-192 675.2 382 83.2
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 5.2e-192 674.5 411 77.4
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 3.3e-191 671.8 404 79.5
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.7e-190 669.5 389 79.2
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 3.7e-190 668.3 389 78.9
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 6.3e-190 667.5 405 80.2
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 1.1e-189 666.8 389 79.2
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.8e-189 666.0 388 82.0
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.0e-187 660.2 412 79.1
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 3.8e-187 658.3 358 84.6
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 1.2e-185 653.3 377 79.8
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 2.8e-182 642.1 401 76.3
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 3.7e-182 641.7 404 77.7
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 3.1e-181 638.6 325 90.2
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 9.5e-178 627.1 342 84.5
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 6.1e-177 624.4 358 80.4
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 2.1e-169 599.4 397 72.8
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 6.8e-168 594.3 393 69.7
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 3.7e-166 588.6 398 69.6
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 8.3e-166 587.4 396 69.2
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 5.4e-165 584.7 394 68.8
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 2.8e-161 572.4 306 86.6
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.8e-160 569.7 306 85.9
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.0e-155 552.4 307 84.4
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 1.1e-152 543.9 347 74.1
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.0e-147 527.3 400 63.2
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.9e-146 523.1 393 63.4
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 2.0e-135 486.5 242 95.0
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 1.6e-108 397.1 209 89.0
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.3e-105 387.5 266 67.3
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 5.5e-93 345.5 195 83.6
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.2e-87 327.8 373 50.9
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 7.7e-87 325.1 217 74.7
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.2e-85 319.7 171 84.2
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 2.7e-84 316.6 161 88.2
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.9e-77 293.9 433 40.0
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 7.2e-77 292.0 224 60.7
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.8e-70 269.6 146 82.9
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 2.3e-59 233.8 146 75.3
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 3.0e-59 233.4 172 62.8
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.9e-45 187.6 190 53.7
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.1e-32 143.3 72 90.3
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 7.1e-24 115.9 208 39.9
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 7.8e-15 85.9 274 27.4
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 9.3e-08 62.4 51 58.8


User provided reference genes

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