Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 3.9e-93 344.7 168 100.0
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 9.1e-42 174.1 92 94.6
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 2.5e-39 166.0 88 93.2
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 9.4e-31 137.5 135 56.3
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 8.3e-27 124.4 120 53.3
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 2.4e-26 122.9 72 77.8
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 2.0e-25 119.8 72 77.8
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 6.1e-22 108.2 72 73.6
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 1.7e-19 100.1 110 45.5
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 4.9e-19 98.6 110 46.4
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 1.4e-18 97.1 131 39.7
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 5.4e-18 95.1 97 51.5
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.0e-16 90.9 72 56.9
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.3e-16 90.5 107 43.9
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.7e-16 90.1 68 58.8
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 3.8e-16 89.0 103 44.7
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 1.5e-15 87.0 72 56.9
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.5e-15 86.3 70 52.9
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 5.6e-15 85.1 70 51.4
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 9.5e-15 84.3 108 42.6
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 9.5e-15 84.3 108 42.6
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.2e-14 84.0 138 38.4
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 1.6e-14 83.6 62 61.3
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 2.1e-14 83.2 122 36.9
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 2.1e-14 83.2 131 38.9
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 2.1e-14 83.2 70 51.4
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 3.6e-14 82.4 83 49.4
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 4.7e-14 82.0 113 39.8
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 6.1e-14 81.6 71 53.5
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 8.0e-14 81.3 110 41.8
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.0e-13 80.9 108 42.6
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 1.0e-13 80.9 108 39.8
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 1.0e-13 80.9 70 50.0
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 1.4e-13 80.5 69 52.2
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.4e-13 80.5 83 47.0
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 2.3e-13 79.7 72 52.8
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 6.8e-13 78.2 108 40.7
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 2.6e-12 76.3 70 48.6
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 3.4e-12 75.9 54 63.0
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 4.4e-12 75.5 70 47.1
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 9.8e-12 74.3 129 32.6
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 9.8e-12 74.3 70 45.7
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 2.2e-11 73.2 119 36.1
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 2.9e-11 72.8 70 44.3
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 6.4e-11 71.6 69 47.8
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 1.1e-10 70.9 130 33.1
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.1e-10 70.9 62 51.6
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 1.1e-10 70.9 135 31.9
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 1.4e-10 70.5 69 46.4
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 4.1e-10 68.9 69 44.9
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 4.1e-10 68.9 66 47.0
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 5.4e-10 68.6 59 54.2
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 7.0e-10 68.2 76 44.7
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 7.0e-10 68.2 47 57.4
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 7.0e-10 68.2 47 57.4
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 7.0e-10 68.2 66 47.0
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 7.0e-10 68.2 47 57.4
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 7.0e-10 68.2 85 41.2
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 1.2e-09 67.4 57 50.9
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 1.6e-09 67.0 59 50.8
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 1.6e-09 67.0 64 45.3
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 1.6e-09 67.0 60 46.7
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 2.7e-09 66.2 60 46.7
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 2.7e-09 66.2 46 63.0
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 3.5e-09 65.9 122 35.2
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 1.3e-08 63.9 48 58.3
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 1.3e-08 63.9 60 45.0
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 1.3e-08 63.9 48 50.0
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 1.3e-08 63.9 56 53.6
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.3e-08 63.9 52 50.0
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 1.7e-08 63.5 60 51.7
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 1.7e-08 63.5 51 54.9
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 2.3e-08 63.2 60 43.3
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 2.3e-08 63.2 66 42.4
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 3.0e-08 62.8 70 38.6
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 5.0e-08 62.0 59 44.1
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 8.6e-08 61.2 89 42.7
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 8.6e-08 61.2 52 48.1
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 1.1e-07 60.8 64 48.4
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 1.1e-07 60.8 124 34.7
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 1.1e-07 60.8 51 52.9
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 1.9e-07 60.1 62 43.5
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 3.3e-07 59.3 57 38.6
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 4.3e-07 58.9 109 30.3
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 4.3e-07 58.9 51 51.0
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 5.6e-07 58.5 89 40.4
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 5.6e-07 58.5 47 46.8
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 5.6e-07 58.5 82 35.4
Lj7A339G40 Lonicera japonica HOM05D004094 ORTHO05D004601 9.5e-07 57.8 52 46.2
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 1.6e-06 57.0 72 40.3
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 4.7e-06 55.5 69 42.0


User provided reference genes

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