Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23285 Trifolium pratense HOM05D000108 ORTHO05D002946 7.6e-36 153.3 77 100.0
Ca_07547_v3 Cicer arietinum L. HOM05D000108 ORTHO05D002946 2.8e-22 108.2 60 90.0
Medtr7g061020 Medicago truncatula HOM05D000108 ORTHO05D002946 3.4e-20 101.3 60 83.3
Glyma.07G132100 Glycine max HOM05D000108 ORTHO05D002946 4.5e-20 100.9 60 85.0
Glyma.18G180900 Glycine max HOM05D000108 ORTHO05D002946 5.9e-20 100.5 60 85.0
arahy.Tifrunner.gnm1.ann1.01RJGJ Arachis hypogaea HOM05D000108 ORTHO05D002946 1.7e-19 99.0 59 83.1
arahy.Tifrunner.gnm1.ann1.M6RMKN Arachis hypogaea HOM05D000108 ORTHO05D002946 1.7e-19 99.0 60 83.3
Lalb_Chr03g0042241 Lupinus albus HOM05D000108 ORTHO05D002946 2.2e-19 98.6 60 83.3
Phvul.008G101900 Phaseolus vulgaris HOM05D000108 ORTHO05D002946 6.5e-19 97.1 60 80.0
QL07p048302 Quercus lobata HOM05D000108 ORTHO05D002946 2.4e-13 78.6 56 73.2
CiPaw.10G145600 Carya illinoinensis HOM05D000108 ORTHO05D002946 5.3e-13 77.4 56 71.4
Duzib093G1657 Durio zibethinus HOM05D000108 ORTHO05D002946 1.2e-12 76.3 50 74.0
Manes.08G079300 Manihot esculenta HOM05D000108 ORTHO05D002946 1.2e-12 76.3 50 72.0
Haze_20790 Corylus avellana HOM05D000108 ORTHO05D002946 1.5e-12 75.9 56 71.4
CsaV3_3G034910 Cucumis sativus L. HOM05D000108 ORTHO05D002946 2.0e-12 75.5 55 67.3
MELO3C009259.2 Cucumis melo HOM05D000108 ORTHO05D002946 2.6e-12 75.1 55 67.3
Gorai.012G104000 Gossypium raimondii HOM05D000108 ORTHO05D002946 2.6e-12 75.1 50 74.0
Ah.12g062400 Amaranthus hybridus HOM05D000108 ORTHO05D002946 3.4e-12 74.7 50 76.0
CSS0042227 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D002946 4.5e-12 74.3 50 70.0
ClCG10G021130 Citrullus lanatus HOM05D000108 ORTHO05D002946 4.5e-12 74.3 55 67.3
Dinv37172 Davidia involucrata HOM05D000108 ORTHO05D002946 5.9e-12 73.9 50 74.0
FvH4_6g13700 Fragaria vesca HOM05D000108 ORTHO05D002946 7.7e-12 73.6 52 67.3
FAN02G2914 Fragaria x ananassa HOM05D000108 ORTHO05D002946 7.7e-12 73.6 52 67.3
FAN09G0754 Fragaria x ananassa HOM05D000108 ORTHO05D002946 7.7e-12 73.6 52 67.3
FAN14G0604 Fragaria x ananassa HOM05D000108 ORTHO05D002946 7.7e-12 73.6 52 67.3
Gohir.D04G121500 Gossypium hirsutum HOM05D000108 ORTHO05D002946 7.7e-12 73.6 50 72.0
Rhsim05G0192700 Rhododendron simsii HOM05D000108 ORTHO05D002946 7.7e-12 73.6 49 71.4
COL.COLO4_14798 Corchorus olitorius HOM05D000108 ORTHO05D002946 1.0e-11 73.2 54 68.5
Sed0017799 Sechium edule HOM05D000108 ORTHO05D002946 1.0e-11 73.2 55 65.5
Cfa017381 Carpinus fangiana HOM05D000108 ORTHO05D002946 1.3e-11 72.8 56 69.6
FAN05G2329 Fragaria x ananassa HOM05D000108 ORTHO05D002946 1.3e-11 72.8 52 67.3
Gohir.A04G082500 Gossypium hirsutum HOM05D000108 ORTHO05D002946 1.7e-11 72.4 50 72.0
Sabra06G0064800 Salix brachista HOM05D000108 ORTHO05D002946 1.7e-11 72.4 52 65.4
Atru.chr8.1974 Acer truncatum HOM05D000108 ORTHO05D002946 2.2e-11 72.0 49 69.4
Actinidia26466 Actinidia chinensis HOM05D000108 ORTHO05D002946 2.2e-11 72.0 50 66.0
SalBow3G2400 Salvia bowleyana HOM05D000108 ORTHO05D002946 2.2e-11 72.0 51 70.6
Prupe.6G255200 Prunus persica HOM05D000108 ORTHO05D002946 2.9e-11 71.6 50 74.0
Thecc.05G039700 Theobroma cacao HOM05D000108 ORTHO05D002946 2.9e-11 71.6 49 71.4
Ciclev10011247m.g Citrus clementina HOM05D000108 ORTHO05D002946 3.8e-11 71.2 50 68.0
Cc06_g02640 Coffea canephora HOM05D000108 ORTHO05D002946 3.8e-11 71.2 49 67.3
Potri.006G085300 Populus trichocarpa HOM05D000108 ORTHO05D002946 3.8e-11 71.2 50 68.0
AUR62041773 Chenopodium quinoa HOM05D000108 ORTHO05D002946 5.0e-11 70.9 49 71.4
AUR62044006 Chenopodium quinoa HOM05D000108 ORTHO05D002946 5.0e-11 70.9 49 71.4
AL6G11590 Arabidopsis lyrata HOM05D000108 ORTHO05D002946 6.5e-11 70.5 50 68.0
Migut.J00329 Erythranthe guttata HOM05D000108 ORTHO05D002946 6.5e-11 70.5 48 70.8
Thhalv10012980m.g Eutrema salsugineum HOM05D000108 ORTHO05D002946 6.5e-11 70.5 50 68.0
Hund10664 Selenicereus undatus HOM05D000108 ORTHO05D002946 6.5e-11 70.5 50 68.0
CANSAT35G0377 Cannabis sativa HOM05D000108 ORTHO05D002946 8.5e-11 70.1 50 66.0
Hma1.2p1_1513F.1_g287980 Hydrangea macrophylla HOM05D000108 ORTHO05D002946 8.5e-11 70.1 49 71.4
CAN.G326.8 Capsicum annuum HOM05D000108 ORTHO05D002946 1.1e-10 69.7 46 73.9
Solyc09g010810.3 Solanum lycopersicum HOM05D000108 ORTHO05D002946 1.1e-10 69.7 50 70.0
MSTRG.19083 Avicennia marina HOM05D000108 ORTHO05D002946 1.4e-10 69.3 50 72.0
BolC3t12654H Brassica oleracea HOM05D000108 ORTHO05D002946 1.9e-10 68.9 51 60.8
EL10Ac7g18200 Beta vulgaris HOM05D000108 ORTHO05D002946 2.5e-10 68.6 49 69.4
MD04G1129000 Malus domestica HOM05D000108 ORTHO05D002946 2.5e-10 68.6 45 77.8
PGR004G0291 Punica granatum HOM05D000108 ORTHO05D002946 2.5e-10 68.6 49 65.3
SGA_v2.0_scaffold126G33786 Striga asiatica HOM05D000108 ORTHO05D002946 2.5e-10 68.6 50 68.0
unitig_21.g21030 Utricularia gibba HOM05D000108 ORTHO05D002946 2.5e-10 68.6 50 68.0
Aa31LG1G22430 Aethionema arabicum HOM05D000108 ORTHO05D002946 3.2e-10 68.2 50 66.0
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 3.2e-10 68.2 50 62.0
C03p00910 Brassica napus HOM05D000108 ORTHO05D002946 3.2e-10 68.2 50 62.0
Oeu049245.2 Olea europaea HOM05D000108 ORTHO05D002946 3.2e-10 68.2 50 66.0
Peaxi162Scf00165g01213 Petunia axillaris HOM05D000108 ORTHO05D002946 3.2e-10 68.2 46 73.9
Sopen09g005540 Solanum pennellii HOM05D000108 ORTHO05D002946 3.2e-10 68.2 50 68.0
GSVIVG01034173001 Vitis vinifera HOM05D000108 ORTHO05D002946 3.2e-10 68.2 50 66.0
RcHm_v2.0_Chr3g0466571 Rosa chinensis HOM05D000108 ORTHO05D002946 4.2e-10 67.8 54 63.0
Sp6g40110 Schrenkiella parvula HOM05D000108 ORTHO05D002946 4.2e-10 67.8 50 64.0
TAR633G2209 Trochodendron aralioides HOM05D000108 ORTHO05D002946 4.2e-10 67.8 50 66.0
BraA10t45360Z Brassica rapa HOM05D000108 ORTHO05D002946 5.5e-10 67.4 50 62.0
AUR62041025 Chenopodium quinoa HOM05D000108 ORTHO05D002946 5.5e-10 67.4 49 69.4
Lsat_1_v5_gn_9_69940 Lactuca sativa HOM05D000108 ORTHO05D002946 5.5e-10 67.4 50 64.0
TWI74G1360 Tripterygium wilfordii HOM05D000108 ORTHO05D002946 5.5e-10 67.4 52 63.5
BcaNung02127 Brassica carinata HOM05D000108 ORTHO05D002946 7.2e-10 67.0 50 62.0
A03p00640 Brassica napus HOM05D000108 ORTHO05D002946 7.2e-10 67.0 47 63.8
C09p74200 Brassica napus HOM05D000108 ORTHO05D002946 7.2e-10 67.0 50 62.0
BolC9t60153H Brassica oleracea HOM05D000108 ORTHO05D002946 7.2e-10 67.0 50 62.0
Cpa.g.sc228.18 Carica papaya HOM05D000108 ORTHO05D002946 7.2e-10 67.0 50 64.0
ECA247G1765 Erigeron canadensis HOM05D000108 ORTHO05D002946 7.2e-10 67.0 50 64.0
Nn5g26916 Nelumbo nucifera HOM05D000108 ORTHO05D002946 7.2e-10 67.0 50 64.0
A10p33290 Brassica napus HOM05D000108 ORTHO05D002946 1.2e-09 66.2 50 60.0
HanXRQChr02g0044261 Helianthus annuus HOM05D000108 ORTHO05D002946 1.2e-09 66.2 50 64.0
Carub.0006s0116 Capsella rubella HOM05D000108 ORTHO05D002946 1.6e-09 65.9 50 60.0
CARHR211030 Cardamine hirsuta HOM05D000108 ORTHO05D002946 3.6e-09 64.7 50 60.0
Lj3A968T31 Lonicera japonica HOM05D000108 ORTHO05D002946 3.6e-09 64.7 60 56.7
PSO384G2896 Papaver somniferum HOM05D000108 ORTHO05D002946 3.6e-09 64.7 50 62.0
BraA03t09454Z Brassica rapa HOM05D000108 ORTHO05D002946 4.6e-09 64.3 47 61.7
Aqoxy4G02922 Aquilegia oxysepala HOM05D000108 ORTHO05D002946 6.1e-09 63.9 51 58.8
Lj1g0007854 Lotus japonicus HOM05D000108 ORTHO05D002946 6.7e-08 60.5 36 86.1
vmacro20156 Vaccinium macrocarpon HOM05D000108 ORTHO05D002946 2.0e-07 58.9 36 80.6
VMungo1383G2664 Vigna mungo HOM05D000108 ORTHO05D002946 2.6e-07 58.5 41 70.7
QL07p048921 Quercus lobata HOM05D000108 ORTHO05D002946 4.4e-07 57.8 51 60.8
Aqoxy4G02921 Aquilegia oxysepala HOM05D000108 ORTHO05D002946 7.4e-07 57.0 47 59.6
AT5G23910 Arabidopsis thaliana HOM05D000108 ORTHO05D002946 7.4e-07 57.0 49 55.1
AL6G35230 Arabidopsis lyrata HOM05D000108 ORTHO05D002946 9.7e-07 56.6 50 54.0
DCAR_009229 Daucus carota HOM05D000108 ORTHO05D002946 1.3e-06 56.2 42 64.3
THA.LOC104816272 Tarenaya hassleriana HOM05D000108 ORTHO05D002946 1.7e-06 55.8 40 67.5
SHI12673 Sapria himalayana HOM05D000108 ORTHO05D002946 2.2e-06 55.5 36 72.2
Nitab4.5_0002018g0020 Nicotiana tabacum HOM05D000108 ORTHO05D002946 2.8e-06 55.1 40 70.0
HanXRQChr14g0462371 Helianthus annuus HOM05D000108 ORTHO05D002946 8.2e-06 53.5 51 58.8


User provided reference genes

Program Settings