Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 3.2e-227 791.6 442 100.0
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 8.4e-188 660.6 417 81.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 2.2e-172 609.4 351 84.3
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 2.2e-172 609.4 351 84.6
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 6.5e-172 607.8 362 82.0
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 6.5e-172 607.8 454 74.9
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.4e-171 606.7 362 81.8
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.9e-171 606.3 381 81.1
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 3.2e-171 605.5 351 85.2
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 3.0e-169 599.0 459 73.0
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 2.0e-168 596.3 418 73.9
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 2.5e-168 595.9 391 76.2
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 8.2e-167 590.9 349 83.1
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.1e-166 590.5 454 70.3
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.1e-166 590.5 465 72.3
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 1.8e-166 589.7 415 73.0
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 3.1e-166 589.0 467 71.1
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 4.1e-166 588.6 400 74.0
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 5.3e-166 588.2 353 81.9
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 5.3e-166 588.2 353 81.6
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.9e-166 587.8 365 80.3
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 9.1e-166 587.4 465 71.0
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.2e-165 587.0 366 80.3
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.2e-165 587.0 467 71.9
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.5e-165 586.6 352 82.4
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 3.4e-165 585.5 426 71.1
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 5.9e-165 584.7 366 80.1
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 5.9e-165 584.7 465 72.5
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 7.7e-165 584.3 351 82.3
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.2e-164 582.8 355 79.7
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 3.8e-164 582.0 356 81.2
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 3.8e-164 582.0 352 81.2
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.1e-163 580.5 366 77.3
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.9e-163 579.7 426 73.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 4.2e-163 578.6 352 80.4
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 4.2e-163 578.6 431 71.9
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 5.5e-163 578.2 378 77.8
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 5.5e-163 578.2 360 78.6
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 9.4e-163 577.4 422 71.3
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 7.9e-162 574.3 453 68.0
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 7.9e-162 574.3 365 77.0
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.0e-161 573.9 460 70.4
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.0e-161 573.9 425 70.1
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 1.0e-161 573.9 359 78.6
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.4e-161 573.5 416 72.8
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.4e-161 573.5 363 77.4
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 1.4e-161 573.5 350 79.7
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 1.4e-161 573.5 359 78.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.4e-161 573.5 423 70.2
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 2.3e-161 572.8 366 78.1
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 3.9e-161 572.0 452 73.2
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 5.1e-161 571.6 416 72.8
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 5.1e-161 571.6 351 79.8
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 6.7e-161 571.2 470 66.8
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 8.8e-161 570.9 419 71.4
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 2.0e-160 569.7 364 77.2
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 9.7e-160 567.4 426 70.2
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 9.7e-160 567.4 417 69.1
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.3e-159 567.0 457 69.8
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.7e-159 566.6 423 72.3
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 2.2e-159 566.2 355 78.6
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 2.2e-159 566.2 426 70.9
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 2.8e-159 565.8 459 70.2
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 4.8e-159 565.1 363 76.3
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 6.3e-159 564.7 355 78.0
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 8.2e-159 564.3 418 72.5
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.4e-158 563.5 351 78.3
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.8e-158 563.1 352 79.0
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 5.3e-158 561.6 426 68.8
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.3e-158 561.6 426 68.8
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 7.0e-158 561.2 351 78.1
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 5.9e-157 558.1 400 74.5
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.0e-156 557.4 350 78.0
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 3.8e-156 555.4 469 70.6
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 9.4e-155 550.8 357 77.0
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.6e-154 550.1 360 76.7
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 6.1e-154 548.1 412 69.2
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 6.7e-153 544.7 418 70.6
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 2.6e-152 542.7 406 67.5
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 2.6e-152 542.7 401 70.1
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.3e-151 540.4 350 74.0
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.7e-151 540.0 350 76.3
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 1.1e-150 537.3 350 74.0
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.1e-150 537.3 350 74.0
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 1.1e-150 537.3 350 74.0
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.1e-150 537.3 359 73.0
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.4e-150 537.0 350 74.0
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 2.4e-150 536.2 350 74.0
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 7.0e-150 534.6 350 73.4
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 2.0e-149 533.1 362 71.3
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 4.5e-149 531.9 472 61.4
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.3e-148 530.4 350 73.4
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.3e-148 530.4 400 68.8
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.9e-148 529.3 350 73.4
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.9e-148 529.3 395 69.6
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 5.0e-148 528.5 363 72.5
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 1.1e-147 527.3 360 73.3
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 4.2e-147 525.4 428 68.7
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.2e-146 523.9 350 73.1
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.6e-146 522.3 366 72.4
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 4.7e-146 521.9 352 72.4
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 6.1e-146 521.5 353 72.8
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.1e-142 509.2 397 68.3
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.5e-139 500.4 436 68.1
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 7.2e-139 498.0 361 69.3
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.8e-137 491.5 431 62.6
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.0e-136 490.0 430 62.8
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 2.0e-136 490.0 341 70.1
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.6e-136 489.6 403 62.0
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 3.4e-136 489.2 413 63.0
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 7.5e-136 488.0 400 66.0
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.7e-135 486.9 413 62.7
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 1.6e-133 480.3 352 69.6
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 7.7e-133 478.0 418 60.8
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 5.0e-132 475.3 421 61.5
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 8.0e-130 468.0 354 65.3
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 7.5e-128 461.5 363 66.1
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 9.8e-128 461.1 326 72.1
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 2.2e-127 459.9 403 59.6
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.2e-126 456.1 403 58.6
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 5.9e-125 451.8 363 65.3
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 2.3e-124 449.9 366 62.6
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 3.4e-120 436.0 432 53.0
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 3.4e-120 436.0 363 60.1
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 3.9e-116 422.5 368 62.2
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 7.3e-115 418.3 418 55.0
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 2.2e-111 406.8 339 58.7
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 2.1e-109 400.2 352 61.1
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.7e-109 399.8 366 67.8
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-108 397.1 358 59.2
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.5e-107 394.0 422 51.9
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 3.6e-106 389.4 338 61.2
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.8e-105 387.1 359 55.2
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.2e-104 384.4 409 52.8
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 2.6e-104 383.3 307 64.2
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.3e-103 380.9 367 53.1
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 4.1e-102 375.9 411 53.0
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 3.9e-100 369.4 345 55.4
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 1.4e-86 324.3 299 56.9
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 2.7e-85 320.1 335 50.4
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 3.5e-85 319.7 635 38.7
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 2.4e-81 307.0 355 45.6
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.9e-79 300.1 242 61.2
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-76 291.2 218 66.5
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 3.9e-76 289.7 377 45.9
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 8.7e-76 288.5 212 68.9
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.7e-71 274.2 168 80.4
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 6.5e-71 272.3 168 78.0
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.4e-70 271.2 342 44.4
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 9.6e-67 258.5 382 42.7
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 3.5e-61 240.0 166 74.1
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.5e-56 224.6 200 59.0
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.7e-34 151.4 98 70.4
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 4.7e-29 133.3 100 67.0
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.7e-26 124.8 103 62.1
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 7.0e-25 119.4 237 37.6
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.5e-24 117.1 177 43.5
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 9.4e-22 109.0 93 65.6
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 7.5e-19 99.4 70 68.6
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 2.8e-18 97.4 122 45.9
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 1.1e-17 95.5 210 37.1
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.9e-14 84.7 46 87.0
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.9e-14 84.7 45 84.4
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 2.5e-14 84.3 70 62.9
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 9.5e-14 82.4 215 30.7
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 4.7e-13 80.1 59 64.4
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 5.2e-12 76.6 75 49.3
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 8.9e-12 75.9 96 46.9
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.1e-09 68.9 78 50.0
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.1e-09 68.9 75 48.0
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 3.2e-09 67.4 124 37.1
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 3.2e-09 67.4 52 55.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 9.2e-09 65.9 202 27.2
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 1.2e-08 65.5 46 67.4
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 1.2e-08 65.5 46 67.4
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 1.6e-08 65.1 51 56.9
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.6e-08 65.1 43 76.7
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.6e-08 63.5 210 26.2
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 5.0e-07 60.1 283 21.9
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 1.1e-06 58.9 39 74.4


User provided reference genes

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