Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23264 Trifolium pratense HOM05D008034 ORTHO05D010051 7.9e-80 300.4 142 100.0
Psat3g140960 Pisum sativum HOM05D008034 ORTHO05D010051 1.3e-69 266.5 142 85.9
Medtr7g060450 Medicago truncatula HOM05D008034 ORTHO05D010051 4.5e-67 258.1 144 84.7
Glyma.18G177500 Glycine max HOM05D008034 ORTHO05D010051 2.0e-59 232.6 143 78.3
Phvul.008G100300 Phaseolus vulgaris HOM05D008034 ORTHO05D010051 1.7e-58 229.6 140 77.1
Lalb_Chr03g0035081 Lupinus albus HOM05D008034 ORTHO05D010051 1.0e-55 220.3 142 73.9
Lalb_Chr03g0042121 Lupinus albus HOM05D008034 ORTHO05D010051 1.5e-54 216.5 142 71.1
Glyma.08G359000 Glycine max HOM05D008034 ORTHO05D010051 7.5e-54 214.2 142 73.2
arahy.Tifrunner.gnm1.ann1.YB7TH1 Arachis hypogaea HOM05D008034 ORTHO05D010051 2.2e-53 212.6 141 70.2
arahy.Tifrunner.gnm1.ann1.JRZ5DE Arachis hypogaea HOM05D008034 ORTHO05D010051 4.1e-52 208.4 141 68.8
QL01p035245 Quercus lobata HOM05D008034 ORTHO05D010051 8.5e-50 200.7 140 67.1
Prupe.6G089000 Prunus persica HOM05D008034 ORTHO05D010051 4.2e-49 198.4 134 67.2
FAN11G2200 Fragaria x ananassa HOM05D008034 ORTHO05D010051 5.5e-49 198.0 134 67.2
FvH4_3g34350 Fragaria vesca HOM05D008034 ORTHO05D010051 1.2e-48 196.8 134 66.4
Atru.chr3.3772 Acer truncatum HOM05D008034 ORTHO05D010051 8.0e-48 194.1 139 64.7
Ciclev10029356m.g Citrus clementina HOM05D008034 ORTHO05D010051 1.4e-47 193.4 140 65.0
Cfa011409 Carpinus fangiana HOM05D008034 ORTHO05D010051 6.8e-47 191.0 139 65.5
Manes.11G137800 Manihot esculenta HOM05D008034 ORTHO05D010051 8.8e-47 190.7 131 67.2
CAN.G84.9 Capsicum annuum HOM05D008034 ORTHO05D010051 1.5e-46 189.9 117 73.5
Nitab4.5_0007786g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 4.4e-46 188.3 117 72.6
TWI75G0515 Tripterygium wilfordii HOM05D008034 ORTHO05D010051 4.4e-46 188.3 138 60.9
Actinidia37272 Actinidia chinensis HOM05D008034 ORTHO05D010051 7.5e-46 187.6 136 64.7
Nitab4.5_0002380g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 7.5e-46 187.6 145 61.4
CSS0025126 Camellia sinensis var. sinensis HOM05D008034 ORTHO05D010051 1.7e-45 186.4 106 76.4
CiPaw.13G103300 Carya illinoinensis HOM05D008034 ORTHO05D010051 1.7e-45 186.4 140 61.4
Duzib170G0117 Durio zibethinus HOM05D008034 ORTHO05D010051 2.2e-45 186.0 138 63.0
Gohir.D07G098700 Gossypium hirsutum HOM05D008034 ORTHO05D010051 2.8e-45 185.7 143 60.8
Gorai.001G106200 Gossypium raimondii HOM05D008034 ORTHO05D010051 2.8e-45 185.7 143 60.8
Gohir.A07G094200 Gossypium hirsutum HOM05D008034 ORTHO05D010051 4.8e-45 184.9 143 60.8
COL.COLO4_18407 Corchorus olitorius HOM05D008034 ORTHO05D010051 1.4e-44 183.3 138 59.4
Actinidia27676 Actinidia chinensis HOM05D008034 ORTHO05D010051 2.4e-44 182.6 136 63.2
Cpa.g.sc139.12 Carica papaya HOM05D008034 ORTHO05D010051 4.1e-44 181.8 141 59.6
Hma1.2p1_0035F.1_g021690 Hydrangea macrophylla HOM05D008034 ORTHO05D010051 4.1e-44 181.8 106 75.5
Solyc11g072765.1 Solanum lycopersicum HOM05D008034 ORTHO05D010051 5.4e-44 181.4 132 61.4
GSVIVG01025076001 Vitis vinifera HOM05D008034 ORTHO05D010051 7.0e-44 181.0 122 68.0
ClCG02G020510 Citrullus lanatus HOM05D008034 ORTHO05D010051 1.2e-43 180.3 132 63.6
Rhsim13G0089800 Rhododendron simsii HOM05D001089 ORTHO05D000920 2.0e-43 179.5 111 69.4
Thecc.09G333100 Theobroma cacao HOM05D008034 ORTHO05D010051 2.7e-43 179.1 139 61.2
RhsimUnG0139800 Rhododendron simsii HOM05D001089 ORTHO05D000920 5.9e-43 177.9 113 68.1
TAR623G1523 Trochodendron aralioides HOM05D008034 ORTHO05D010051 5.0e-42 174.9 136 62.5
VMungo1383G3175 Vigna mungo HOM05D008034 ORTHO05D010051 6.5e-42 174.5 145 61.4
Haze_23982 Corylus avellana HOM05D008034 ORTHO05D010051 1.1e-41 173.7 109 71.6
HanXRQChr08g0230621 Helianthus annuus HOM05D008034 ORTHO05D010051 1.1e-41 173.7 109 69.7
Aqoxy4G03114 Aquilegia oxysepala HOM05D008034 ORTHO05D010051 7.2e-41 171.0 112 67.0
CsaV3_6G021950 Cucumis sativus L. HOM05D008034 ORTHO05D010051 3.6e-40 168.7 109 67.0
ECA247G3899 Erigeron canadensis HOM05D008034 ORTHO05D010051 1.0e-39 167.2 110 64.5
Nn2g10576 Nelumbo nucifera HOM05D008034 ORTHO05D010051 1.0e-39 167.2 114 63.2
Eucgr.B02437 Eucalyptus grandis HOM05D008034 ORTHO05D010051 1.4e-39 166.8 143 55.2
Lsat_1_v5_gn_9_21900 Lactuca sativa HOM05D008034 ORTHO05D010051 1.4e-39 166.8 109 66.1
MELO3C025715.2 Cucumis melo HOM05D008034 ORTHO05D010051 1.8e-39 166.4 104 70.2
PSO729G0256 Papaver somniferum HOM05D008034 ORTHO05D010051 4.0e-39 165.2 144 54.9
PSO416G0003 Papaver somniferum HOM05D008034 ORTHO05D010051 5.2e-39 164.9 142 54.2
CANSAT54G0614 Cannabis sativa HOM05D008034 ORTHO05D010051 8.8e-39 164.1 136 54.4
PSO724G0148 Papaver somniferum HOM05D008034 ORTHO05D010051 2.6e-38 162.5 144 53.5
Sed0016706 Sechium edule HOM05D008034 ORTHO05D010051 2.6e-38 162.5 129 58.9
PGR102G1024 Punica granatum HOM05D008034 ORTHO05D010051 3.4e-38 162.2 151 53.0
ATR0594G086 Amborella trichopoda HOM05D008034 ORTHO05D010051 7.7e-35 151.0 103 63.1
MBI14_g16339_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D010051 2.3e-34 149.4 129 56.6
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 8.6e-34 147.5 128 50.8
AUR62009660 Chenopodium quinoa HOM05D008034 ORTHO05D010051 2.1e-32 142.9 135 50.4
Ah.15g096410 Amaranthus hybridus HOM05D008034 ORTHO05D010051 2.0e-30 136.3 103 55.3
Sc21g0005330 Simmondsia chinensis HOM05D008034 ORTHO05D010051 1.4e-23 113.6 77 61.0
Dinv06338 Davidia involucrata HOM05D008034 ORTHO05D010051 7.5e-22 107.8 65 67.7
SEGI_07630 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 2.0e-19 99.8 131 35.9
SEGI_26238 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 8.1e-16 87.8 109 39.4
SEGI_39089 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 8.1e-16 87.8 109 39.4
ATR0594G007 Amborella trichopoda HOM05D001120 ORTHO05D010051 1.1e-15 87.4 119 37.8
AUR62001862 Chenopodium quinoa HOM05D008034 ORTHO05D010051 1.1e-15 87.4 105 40.0
RcHm_v2.0_Chr1g0364691 Rosa chinensis HOM05D008034 ORTHO05D010051 2.3e-15 86.3 104 42.3
MD07G1183300 Malus domestica HOM05D008034 ORTHO05D010051 8.9e-15 84.3 125 36.8
Prupe.2G222000 Prunus persica HOM05D001120 ORTHO05D010051 2.6e-14 82.8 107 40.2
Cpa.g.sc10.57 Carica papaya HOM05D001787 ORTHO05D007379 3.4e-14 82.4 101 40.6
FAN06G2736 Fragaria x ananassa HOM05D001787 ORTHO05D007379 4.4e-14 82.0 104 41.3
FAN03G1672 Fragaria x ananassa HOM05D001787 ORTHO05D007379 5.8e-14 81.6 104 41.3
FAN10G0756 Fragaria x ananassa HOM05D001787 ORTHO05D007379 5.8e-14 81.6 104 41.3
FvH4_7g20661 Fragaria vesca HOM05D008034 ORTHO05D010051 7.5e-14 81.3 104 41.3
FAN06G3907 Fragaria x ananassa HOM05D001787 ORTHO05D007379 7.5e-14 81.3 104 41.3
FAN01G1155 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.3e-13 80.5 104 41.3
FAN01G1685 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.3e-13 80.5 104 41.3
Nn2g10579 Nelumbo nucifera HOM05D001120 ORTHO05D010051 1.7e-13 80.1 102 41.2
MBI14_g46136_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 4.9e-13 78.6 101 40.6
Potri.010G214400 Populus trichocarpa HOM05D008034 ORTHO05D010051 6.4e-13 78.2 104 38.5
Manes.07G106000 Manihot esculenta HOM05D008034 ORTHO05D002447 9.2e-12 74.3 104 37.5
Sopen11g030440 Solanum pennellii HOM05D008034 ORTHO05D010051 2.1e-11 73.2 40 70.0
TAR369G0105 Trochodendron aralioides HOM05D008034 ORTHO05D010051 2.7e-11 72.8 101 36.6
Cc06_g08490 Coffea canephora HOM05D001120 ORTHO05D002447 6.0e-11 71.6 132 31.1
Hma1.2p1_0018F.1_g012390 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 1.7e-10 70.1 101 33.7
SEGI_18751 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 3.0e-10 69.3 130 28.5
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 3.9e-10 68.9 101 32.7
Sopen01g046430 Solanum pennellii HOM05D001120 ORTHO05D002447 6.6e-10 68.2 107 32.7
C04p69070 Brassica napus HOM05D001120 ORTHO05D002447 1.1e-09 67.4 103 31.1
BolC4t28404H Brassica oleracea HOM05D001120 ORTHO05D002447 1.1e-09 67.4 103 31.1
A04p31640 Brassica napus HOM05D001120 ORTHO05D002447 1.5e-09 67.0 103 31.1
BraA04t18622Z Brassica rapa HOM05D001120 ORTHO05D002447 1.5e-09 67.0 103 31.1
A05p02300 Brassica napus HOM05D001120 ORTHO05D002447 1.9e-09 66.6 102 31.4
BraA05t19225Z Brassica rapa HOM05D001120 ORTHO05D002447 1.9e-09 66.6 102 31.4
C04p02740 Brassica napus HOM05D001120 ORTHO05D002447 2.5e-09 66.2 102 31.4
BolC4t21914H Brassica oleracea HOM05D001120 ORTHO05D002447 2.5e-09 66.2 102 31.4
PGSC0003DMG400023798 Solanum tuberosum HOM05D001120 ORTHO05D002447 3.3e-09 65.9 96 33.3
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 4.3e-09 65.5 101 32.7
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 4.3e-09 65.5 101 32.7
CAN.G798.15 Capsicum annuum HOM05D001120 ORTHO05D002447 4.3e-09 65.5 96 35.4
Manes.14G132300 Manihot esculenta HOM05D001120 ORTHO05D002447 4.3e-09 65.5 103 32.0
Potri.018G131800 Populus trichocarpa HOM05D001120 ORTHO05D002447 4.3e-09 65.5 103 31.1
Solyc01g104020.2 Solanum lycopersicum HOM05D001120 ORTHO05D002447 4.3e-09 65.5 96 33.3
Cc04_g04230 Coffea canephora HOM05D001120 ORTHO05D002447 9.5e-09 64.3 104 30.8
Sopen01g046420 Solanum pennellii HOM05D001120 ORTHO05D002447 9.5e-09 64.3 96 33.3
PGSC0003DMG400023797 Solanum tuberosum HOM05D001120 ORTHO05D002447 9.5e-09 64.3 107 31.8
Aqoxy7G02184 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 1.2e-08 63.9 99 28.3
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 1.2e-08 63.9 101 32.7
Potri.006G069800 Populus trichocarpa HOM05D001120 ORTHO05D002447 1.2e-08 63.9 103 31.1
THA.LOC104815278 Tarenaya hassleriana HOM05D001120 ORTHO05D002447 1.2e-08 63.9 101 30.7
MBI04_g38656_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 2.1e-08 63.2 141 29.8
Sabra06G0052100 Salix brachista HOM05D001120 ORTHO05D002447 2.8e-08 62.8 101 29.7
CAN.G798.16 Capsicum annuum HOM05D001120 ORTHO05D002447 3.6e-08 62.4 96 31.2
MBI14_g16338_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D002447 3.6e-08 62.4 103 37.9
Lj3g0018692 Lotus japonicus HOM05D001120 ORTHO05D002447 6.2e-08 61.6 107 30.8
TPR.G37175 Trifolium pratense HOM05D001120 ORTHO05D002447 1.1e-07 60.8 96 34.4
Haze_16964 Corylus avellana HOM05D008034 ORTHO05D010051 1.8e-07 60.1 112 31.2
Phvul.007G063600 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 1.8e-07 60.1 106 29.2
Glyma.10G242000 Glycine max HOM05D001120 ORTHO05D002447 2.3e-07 59.7 116 30.2
TAR383G0469 Trochodendron aralioides HOM05D002280 ORTHO05D002322 2.3e-07 59.7 96 30.2
Lalb_Chr22g0350891 Lupinus albus HOM05D001120 ORTHO05D002447 4.0e-07 58.9 105 31.4
Nn2g12032 Nelumbo nucifera HOM05D001120 ORTHO05D002447 4.0e-07 58.9 101 31.7
Nitab4.5_0000024g0220 Nicotiana tabacum HOM05D001120 ORTHO05D002447 4.0e-07 58.9 96 32.3
Peaxi162Scf00148g00114 Petunia axillaris HOM05D001120 ORTHO05D002447 4.0e-07 58.9 98 31.6
Psat5g300960 Pisum sativum HOM05D001120 ORTHO05D002447 4.0e-07 58.9 96 32.3
VMungo0720G0371 Vigna mungo HOM05D001120 ORTHO05D002447 4.0e-07 58.9 106 30.2
CsaV3_3G016460 Cucumis sativus L. HOM05D001120 ORTHO05D002447 5.2e-07 58.5 101 32.7
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 5.2e-07 58.5 107 29.9
Manes.14G031901 Manihot esculenta HOM05D001120 ORTHO05D002447 8.9e-07 57.8 101 30.7
Cpa.g.sc3.254 Carica papaya HOM05D001120 ORTHO05D002447 1.2e-06 57.4 102 30.4
ClCG05G007570 Citrullus lanatus HOM05D001120 ORTHO05D002447 1.5e-06 57.0 131 29.8
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 2.0e-06 56.6 100 29.0
Nitab4.5_0001250g0010 Nicotiana tabacum HOM05D001120 ORTHO05D002447 2.0e-06 56.6 96 30.2
Psat6g203680 Pisum sativum HOM05D001120 ORTHO05D002447 2.0e-06 56.6 101 28.7
TPR.G26127 Trifolium pratense HOM05D001120 ORTHO05D002447 2.6e-06 56.2 106 28.3
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 3.4e-06 55.8 95 29.5
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 3.4e-06 55.8 104 28.8
Ca_10832_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002447 4.4e-06 55.5 106 27.4
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 4.4e-06 55.5 95 28.4
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 4.4e-06 55.5 95 27.4
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 5.8e-06 55.1 102 28.4
Glyma.09G151900 Glycine max HOM05D001120 ORTHO05D002447 7.6e-06 54.7 102 29.4
Medtr2g103330 Medicago truncatula HOM05D001120 ORTHO05D002447 7.6e-06 54.7 97 35.1
Medtr2g103360 Medicago truncatula HOM05D001120 ORTHO05D002447 9.9e-06 54.3 96 29.2
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.9e-06 54.3 96 29.2


User provided reference genes

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