Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 0.0e+00 1136.3 571 100.0
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.5e-306 1055.4 571 94.0
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.7e-265 919.1 586 80.9
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 6.1e-255 884.0 572 79.2
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 6.5e-249 864.0 574 77.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 2.3e-222 775.8 585 70.1
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.7e-217 759.6 583 68.8
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 6.5e-217 757.7 578 68.7
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 5.9e-210 734.6 575 68.2
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 4.7e-207 724.9 575 66.4
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.2e-198 694.9 586 62.3
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 9.8e-197 690.6 592 61.8
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 6.6e-177 624.8 582 57.9
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-176 623.6 611 56.0
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-176 623.6 611 56.0
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.6e-170 603.6 592 54.1
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.6e-167 593.6 580 55.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 7.6e-165 584.7 577 53.2
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.8e-164 582.4 582 53.3
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 7.1e-163 578.2 582 53.3
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 4.0e-158 562.4 578 52.6
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.1e-155 554.3 574 53.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 3.2e-155 552.7 662 46.8
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.1e-154 550.1 602 53.0
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.3e-153 547.4 591 51.4
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.1e-152 544.3 586 49.8
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.1e-152 544.3 611 50.7
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.6e-152 542.0 585 49.7
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 7.4e-152 541.6 583 50.6
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 2.8e-151 539.7 585 49.7
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.7e-151 539.3 587 49.4
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.4e-150 536.6 617 49.6
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 5.3e-150 535.4 600 50.5
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 5.8e-149 531.9 592 49.8
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.9e-148 529.6 582 49.3
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.8e-148 529.3 591 48.4
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 3.8e-148 529.3 593 49.2
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 5.5e-147 525.4 602 49.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 4.3e-144 515.8 501 53.7
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.1e-143 513.5 524 52.3
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.2e-143 511.9 591 49.2
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.7e-140 503.8 588 47.1
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.5e-140 501.9 629 47.2
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 8.4e-140 501.5 571 48.7
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.1e-138 496.9 642 45.2
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.8e-137 493.8 640 43.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 9.7e-136 488.0 654 44.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.8e-135 486.5 503 51.7
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.7e-135 486.1 633 46.6
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 8.2e-135 485.0 623 46.1
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 4.1e-134 482.6 579 46.1
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.5e-133 480.7 436 58.7
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 3.4e-133 479.6 618 45.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 7.7e-133 478.4 591 44.5
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 8.5e-132 474.9 577 45.4
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.6e-130 470.7 582 44.7
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.1e-130 470.3 581 43.2
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.7e-130 469.9 598 45.7
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 4.6e-130 469.2 580 45.7
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.0e-129 468.0 581 45.3
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.4e-129 467.6 581 45.1
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.5e-128 464.2 586 44.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 5.7e-128 462.2 459 49.7
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.3e-127 461.1 583 43.6
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.3e-127 461.1 592 43.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.7e-127 460.7 575 44.3
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.2e-127 460.3 467 51.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 2.8e-127 459.9 583 44.3
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.4e-126 457.6 459 49.7
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.8e-126 457.2 574 43.4
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.8e-126 457.2 579 42.8
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.8e-126 457.2 503 47.9
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 3.1e-126 456.4 581 45.1
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 4.1e-126 456.1 613 44.5
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 5.3e-126 455.7 497 50.3
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 6.9e-126 455.3 581 44.1
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 9.1e-126 454.9 581 44.4
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.4e-125 453.0 571 44.3
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 4.5e-125 452.6 578 44.3
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.9e-125 452.2 471 49.7
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 7.7e-125 451.8 579 45.1
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 3.2e-123 446.4 461 48.4
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.2e-123 446.4 618 43.2
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.6e-122 444.1 580 43.6
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 3.0e-121 439.9 459 47.5
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.6e-120 436.8 624 40.9
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.6e-120 436.8 663 41.9
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 4.4e-120 436.0 626 40.7
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.2e-119 433.7 659 40.2
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.4e-118 430.3 436 51.8
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 5.5e-115 419.1 578 42.2
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-112 411.0 579 42.7
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 8.2e-111 405.2 456 45.0
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 4.5e-109 399.4 303 67.0
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.5e-108 395.6 555 43.1
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.4e-104 383.3 614 41.4
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 5.4e-102 375.9 515 44.1
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.5e-99 367.1 583 39.8
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.0e-97 361.7 334 56.3
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 4.0e-97 359.8 469 40.9
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 4.0e-97 359.8 586 38.2
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.1e-94 351.7 577 40.7
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.4e-94 351.3 348 54.0
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.4e-94 351.3 503 41.0
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.2e-93 348.2 498 40.6
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 5.9e-93 345.9 354 53.4
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.1e-91 341.7 531 38.6
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.6e-90 337.8 608 37.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 4.7e-90 336.3 483 43.3
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.0e-89 333.2 459 39.7
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.2e-85 321.6 377 45.6
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 6.6e-84 315.8 476 37.2
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.6e-82 311.2 499 40.1
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.0e-80 304.3 367 46.6
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.9e-76 290.0 494 35.8
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 3.6e-74 283.5 331 52.3
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.4e-70 271.6 340 45.6
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 9.5e-67 258.8 245 54.7
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.8e-66 257.3 262 48.1
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.9e-65 252.3 271 52.4
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.7e-61 240.7 323 41.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.6e-61 240.0 243 53.5
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.7e-60 238.0 309 44.0
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 3.4e-56 223.8 275 47.3
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.7e-53 214.2 243 44.4
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 1.3e-52 211.8 275 45.8
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 7.3e-51 206.1 244 50.4
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 9.6e-51 205.7 166 60.2
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.6e-50 203.8 254 44.5
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 2.2e-47 194.5 132 65.9
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.2e-47 194.5 235 46.8
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 4.2e-46 190.3 184 55.4
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.1e-46 189.5 227 46.3
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.7e-39 168.3 422 30.3
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 3.8e-39 167.2 403 34.2
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.0e-36 159.1 160 51.2
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.9e-35 154.8 204 47.1
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 1.1e-33 149.1 226 41.6
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.9e-31 140.2 254 41.3
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.2e-30 137.1 168 46.4
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.6e-29 133.7 184 42.9
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.9e-29 132.9 104 62.5
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 3.9e-28 130.6 104 61.5
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 3.9e-28 130.6 142 46.5
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.1e-28 130.2 184 42.4
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.7e-28 129.4 184 42.4
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-27 129.0 99 62.6
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.5e-27 128.6 184 44.0
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-27 127.5 184 42.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-27 127.5 184 42.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-27 127.5 184 42.4
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.8e-26 124.4 189 39.2
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 3.7e-26 124.0 632 21.7
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 8.2e-26 122.9 87 70.1
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.1e-22 112.5 116 53.4
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.1e-22 112.5 93 55.9
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.3e-22 109.4 109 56.0
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.3e-19 100.5 251 29.9
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 9.7e-19 99.4 84 54.8
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-18 98.6 84 57.1
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.4e-17 94.7 240 32.1
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-16 92.4 171 37.4
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 5.0e-15 87.0 79 55.7
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 5.1e-12 77.0 69 47.8
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.3e-11 74.3 50 66.0
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.2e-10 71.6 109 45.9
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 6.9e-09 66.6 45 66.7
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 1.5e-08 65.5 113 41.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 7.7e-08 63.2 186 35.5
arahy.Tifrunner.gnm1.ann1.X7RZ6W Arachis hypogaea HOM05D001609 ORTHO05D001469 1.4e-06 58.9 96 37.5
FAN15G1786 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.2e-06 57.8 55 47.3


User provided reference genes

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