Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 1.2e-275 952.6 483 100.0
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 2.1e-256 888.6 470 95.7
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 3.7e-245 851.3 470 91.1
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 9.4e-241 836.6 469 89.3
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 1.5e-238 829.3 469 88.9
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 6.1e-232 807.4 469 86.6
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 1.0e-231 806.6 466 85.8
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.7e-226 789.3 468 84.2
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 5.3e-220 767.7 462 83.8
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 8.5e-218 760.4 468 80.6
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 4.4e-214 748.0 469 79.3
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 1.3e-205 719.9 468 75.0
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 3.5e-203 711.8 469 76.8
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.3e-202 709.9 422 84.1
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 7.3e-201 704.1 459 75.8
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 1.4e-196 689.9 469 74.0
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 7.8e-195 684.1 450 75.8
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 3.0e-194 682.2 469 72.9
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 6.6e-194 681.0 469 72.7
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 3.3e-193 678.7 468 73.1
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 5.6e-193 677.9 455 74.5
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 6.2e-192 674.5 469 72.5
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 1.3e-189 666.8 468 71.8
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.1e-188 663.7 462 71.4
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.1e-188 663.7 461 71.8
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 1.9e-188 662.9 470 71.9
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.2e-188 662.1 461 71.6
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 4.1e-188 661.8 461 73.1
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 5.4e-188 661.4 446 72.9
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 9.2e-188 660.6 469 70.4
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 9.2e-188 660.6 463 71.5
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.2e-187 660.2 474 70.9
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 3.5e-187 658.7 455 72.3
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 1.5e-185 653.3 462 71.0
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 1.8e-183 646.4 473 67.9
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 2.3e-183 646.0 461 72.2
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 3.1e-183 645.6 473 67.7
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 5.2e-183 644.8 461 72.0
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 6.8e-183 644.4 460 69.1
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 2.0e-182 642.9 505 66.5
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 3.4e-182 642.1 443 73.1
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 6.4e-181 637.9 455 70.1
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.9e-180 636.3 461 71.1
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 3.2e-180 635.6 459 69.3
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 5.4e-180 634.8 470 67.7
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 3.5e-179 632.1 452 70.6
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 6.0e-179 631.3 455 69.5
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.6e-176 623.2 435 71.3
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 3.6e-176 622.1 469 67.0
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 4.7e-176 621.7 458 69.7
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 4.7e-176 621.7 458 69.7
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 4.7e-176 621.7 449 69.3
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 8.1e-176 620.9 473 66.8
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.1e-175 620.5 456 68.9
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.4e-175 620.2 466 68.2
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 2.4e-175 619.4 456 68.6
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 3.1e-175 619.0 455 68.1
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 5.2e-175 618.2 459 68.2
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 2.0e-174 616.3 459 67.3
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 1.3e-173 613.6 464 67.0
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 6.4e-173 611.3 492 64.6
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 8.4e-173 610.9 464 66.8
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 1.1e-172 610.5 458 68.3
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 7.1e-172 607.8 463 67.2
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.2e-171 607.1 462 66.0
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 4.3e-169 598.6 461 66.8
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 8.1e-168 594.3 461 65.7
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 3.4e-166 589.0 410 70.7
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 1.7e-165 586.6 461 66.6
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 6.4e-165 584.7 452 64.4
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.3e-162 577.0 457 64.3
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.7e-162 576.6 458 64.8
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 3.1e-159 565.8 454 63.9
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.4e-158 562.4 461 61.4
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 2.7e-155 552.7 439 64.9
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 3.5e-155 552.4 522 57.3
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 2.3e-154 549.7 559 54.0
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 3.3e-153 545.8 449 61.9
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 7.4e-153 544.7 456 61.0
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 9.6e-153 544.3 451 62.3
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.8e-150 535.0 386 69.7
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 2.2e-149 533.1 465 57.0
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 5.5e-148 528.5 457 60.4
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 7.1e-148 528.1 406 66.0
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.3e-146 523.1 369 70.7
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 3.0e-146 522.7 353 77.1
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.6e-142 509.6 459 58.2
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 2.5e-140 503.1 479 59.3
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 7.1e-140 501.5 462 59.5
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 2.7e-139 499.6 466 58.2
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 6.0e-139 498.4 508 56.5
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.0e-133 481.1 342 72.2
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.7e-133 480.3 461 58.1
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 4.2e-132 475.7 489 54.2
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 4.3e-129 465.7 453 56.1
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 4.8e-128 462.2 326 69.9
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.1e-127 461.1 357 64.4
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 1.5e-126 457.2 453 54.5
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 2.4e-119 433.3 328 66.2
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 2.1e-115 420.2 368 57.6
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 4.7e-115 419.1 439 53.3
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.0e-113 413.7 471 46.9
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.0e-110 403.7 276 74.6
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 5.0e-109 399.1 464 47.6
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 7.2e-108 395.2 480 45.8
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.0e-106 391.3 310 64.8
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 4.4e-105 386.0 437 50.8
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 8.0e-99 365.2 463 48.4
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 7.0e-95 352.1 271 66.4
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 2.1e-91 340.5 308 57.1
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 1.8e-87 327.4 294 57.5
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 2.0e-78 297.4 286 55.2
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 5.0e-77 292.7 155 90.3
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 8.6e-77 292.0 377 44.3
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.6e-67 261.2 404 42.6
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.1e-66 258.5 461 36.9
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 1.2e-65 255.0 754 27.5
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.1e-45 186.4 152 62.5
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.4e-42 178.3 178 55.6
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 1.8e-34 151.4 450 29.1
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.0e-33 147.9 181 45.3
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 1.1e-26 125.6 514 25.1
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.4e-26 125.2 67 88.1
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 5.3e-26 123.2 91 68.1
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-25 122.1 76 75.0
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 2.9e-24 117.5 85 64.7
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 4.3e-20 103.6 108 55.6
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 3.9e-13 80.5 162 30.9
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.3e-11 75.5 62 59.7
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 8.2e-11 72.8 113 38.9
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.7e-06 57.0 44 56.8


User provided reference genes

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