Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.3e-122 443.0 214 100.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 9.6e-113 410.2 213 91.5
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 5.3e-111 404.4 213 90.1
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 9.0e-111 403.7 213 90.6
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.6e-104 382.9 213 83.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.6e-104 382.9 214 84.6
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.5e-102 376.3 214 81.8
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 5.8e-102 374.4 213 82.2
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 7.1e-100 367.5 213 79.8
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 6.0e-99 364.4 213 80.3
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 3.0e-98 362.1 213 78.4
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 8.7e-98 360.5 229 76.0
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.1e-97 360.1 213 77.0
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 4.8e-96 354.8 213 76.5
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 6.3e-96 354.4 254 70.1
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 8.2e-96 354.0 213 77.9
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.8e-95 352.8 213 76.1
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 3.1e-95 352.1 213 76.5
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.1e-95 352.1 213 77.9
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 5.3e-95 351.3 213 76.1
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 4.5e-94 348.2 213 75.6
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 5.9e-94 347.8 213 75.6
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 5.9e-94 347.8 199 80.9
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.0e-93 347.1 213 76.1
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 5.0e-93 344.7 213 74.2
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.1e-92 343.6 213 74.2
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.2e-91 340.1 213 73.2
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.6e-91 339.7 213 74.6
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 2.1e-91 339.3 213 73.7
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 4.6e-91 338.2 213 71.8
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 4.6e-91 338.2 213 74.6
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 7.9e-91 337.4 213 72.8
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 2.3e-90 335.9 213 72.8
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.9e-90 335.1 213 72.3
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 6.7e-90 334.3 213 71.8
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.1e-89 333.6 214 73.8
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 5.7e-89 331.3 217 70.5
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 5.7e-89 331.3 213 72.8
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 7.4e-89 330.9 213 72.3
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 9.7e-89 330.5 213 69.0
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.3e-88 330.1 213 71.4
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 1.6e-88 329.7 213 70.4
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.6e-88 329.7 213 71.8
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.8e-88 328.9 213 72.3
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 3.7e-88 328.6 213 72.3
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 8.2e-88 327.4 200 75.5
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 8.2e-88 327.4 213 71.4
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 8.2e-88 327.4 213 70.9
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 5.3e-87 324.7 216 71.3
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 5.9e-86 321.2 213 70.9
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 1.3e-85 320.1 239 64.9
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-85 319.7 213 69.0
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.2e-85 319.3 216 69.0
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 5.0e-85 318.2 214 69.6
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 6.5e-85 317.8 216 68.5
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 6.5e-85 317.8 216 68.5
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 8.5e-85 317.4 213 70.4
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 8.5e-85 317.4 215 68.8
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.1e-84 317.0 213 70.4
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.9e-84 316.2 213 69.5
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 2.5e-84 315.8 213 66.7
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 7.2e-84 314.3 216 68.1
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.2e-83 313.5 213 69.0
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 6.1e-83 311.2 213 66.2
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.4e-82 310.1 213 66.2
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 2.3e-82 309.3 215 68.4
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 3.9e-82 308.5 213 69.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 5.1e-82 308.1 213 66.7
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.1e-81 307.0 213 67.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.0e-81 306.2 213 65.3
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 7.4e-81 304.3 213 64.8
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 1.1e-79 300.4 215 65.6
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.4e-79 300.1 213 66.7
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.4e-79 299.3 213 66.2
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 3.1e-79 298.9 213 66.2
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 6.9e-79 297.7 214 66.4
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 9.1e-79 297.4 213 64.3
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.5e-78 296.6 213 66.2
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 2.6e-78 295.8 213 68.1
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 7.7e-78 294.3 214 65.4
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.3e-77 293.5 213 65.7
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.9e-77 292.4 199 69.3
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.8e-77 292.0 213 66.2
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 5.0e-77 291.6 213 64.8
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 6.5e-77 291.2 213 65.3
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 6.5e-77 291.2 213 65.3
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 6.5e-77 291.2 199 68.8
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 5.5e-76 288.1 214 65.0
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.2e-75 287.0 213 63.4
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.2e-75 287.0 213 63.4
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.2e-75 287.0 213 63.4
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 2.7e-75 285.8 213 64.3
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.8e-74 283.1 213 64.3
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 3.3e-73 278.9 213 62.0
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 3.3e-73 278.9 213 62.0
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 4.4e-73 278.5 213 62.9
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 8.5e-69 264.2 166 74.1
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.6e-67 258.8 258 51.9
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.7e-61 240.0 144 74.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 3.2e-60 235.7 157 68.8
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 5.5e-60 235.0 228 56.6
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.3e-58 229.6 214 50.9
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 2.8e-56 222.6 151 68.9
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.1e-55 219.2 139 74.1
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 4.1e-55 218.8 145 69.7
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 4.1e-55 218.8 147 68.7
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 3.5e-54 215.7 146 67.8
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.5e-54 215.7 146 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 6.5e-53 211.5 214 49.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.3e-48 197.2 201 47.8
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.4e-47 193.7 220 47.3
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.7e-40 170.2 146 56.2
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 6.2e-35 151.8 163 47.2
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 9.8e-33 144.4 196 41.3
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 4.3e-28 129.0 78 73.1
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 2.3e-21 106.7 67 70.1
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 8.6e-21 104.8 80 57.5
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.8e-19 99.8 171 39.2
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.5e-17 94.0 63 66.7
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 3.2e-15 86.3 53 71.7
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 9.3e-07 58.2 60 43.3


User provided reference genes

Program Settings