Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 5.0e-26 120.2 54 100.0
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.9e-25 118.2 53 98.1
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.9e-25 118.2 53 98.1
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.6e-24 114.0 53 94.3
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 4.7e-24 113.6 53 92.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 6.1e-24 113.2 52 94.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.0e-23 112.5 53 92.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.4e-23 112.1 53 90.6
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.5e-22 108.6 52 88.5
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 7.5e-22 106.3 53 90.6
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.7e-21 104.0 54 81.5
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 4.8e-21 103.6 52 86.5
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 4.8e-21 103.6 52 86.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 4.8e-21 103.6 52 86.5
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 6.3e-21 103.2 53 83.0
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 6.3e-21 103.2 53 83.0
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 6.3e-21 103.2 53 83.0
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 8.3e-21 102.8 53 83.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 8.3e-21 102.8 52 84.6
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-20 102.1 52 84.6
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-20 102.1 52 84.6
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-20 102.1 52 84.6
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-20 102.1 53 81.1
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.8e-20 101.7 53 83.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 3.1e-20 100.9 52 80.8
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.1e-20 100.9 52 82.7
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 3.1e-20 100.9 51 82.4
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 3.1e-20 100.9 53 84.9
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 3.1e-20 100.9 53 84.9
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 5.4e-20 100.1 53 81.1
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 5.4e-20 100.1 53 79.2
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 9.1e-20 99.4 53 83.0
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.6e-19 98.6 52 80.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.0e-19 98.2 53 77.4
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.0e-19 98.2 53 77.4
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 3.5e-19 97.4 52 78.8
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 3.5e-19 97.4 53 77.4
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 4.5e-19 97.1 53 77.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.5e-19 97.1 53 75.5
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.9e-19 96.7 52 76.9
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 7.7e-19 96.3 52 78.8
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 7.7e-19 96.3 52 78.8
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.7e-19 96.3 52 78.8
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.0e-18 95.9 52 76.9
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.0e-18 95.9 53 81.1
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.3e-18 95.5 47 83.0
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.7e-18 95.1 52 76.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.3e-18 94.7 52 73.1
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.3e-18 94.7 51 82.4
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.9e-18 94.4 52 76.9
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 2.9e-18 94.4 53 75.5
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.8e-18 94.0 52 73.1
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.8e-18 94.0 52 73.1
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 3.8e-18 94.0 52 80.8
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.8e-18 94.0 53 73.6
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 3.8e-18 94.0 52 75.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.0e-18 93.6 53 67.9
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 6.6e-18 93.2 52 75.0
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 6.6e-18 93.2 53 77.4
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.6e-18 93.2 52 76.9
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.5e-17 92.0 52 75.0
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.5e-17 92.0 53 69.8
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.9e-17 91.7 51 78.4
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.9e-17 91.7 52 71.2
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.5e-17 91.3 52 75.0
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 2.5e-17 91.3 53 69.8
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.3e-17 90.9 53 73.6
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.3e-17 90.9 52 75.0
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.2e-17 90.5 52 71.2
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 5.5e-17 90.1 51 74.5
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 5.5e-17 90.1 51 74.5
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.5e-17 90.1 51 74.5
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 5.5e-17 90.1 51 74.5
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 5.5e-17 90.1 52 69.2
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 5.5e-17 90.1 51 74.5
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 7.2e-17 89.7 52 71.2
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.2e-16 89.0 51 72.5
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.2e-16 89.0 51 76.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 2.8e-16 87.8 52 75.0
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.6e-16 87.4 53 71.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.6e-16 87.4 52 73.1
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.7e-16 87.0 51 72.5
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.7e-16 87.0 53 73.6
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 4.7e-16 87.0 52 71.2
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 8.0e-16 86.3 51 74.5
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 8.0e-16 86.3 52 67.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 1.0e-15 85.9 51 72.5
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.0e-15 85.9 51 72.5
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-15 85.9 51 70.6
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.4e-15 85.5 51 70.6
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.8e-15 85.1 51 70.6
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.8e-15 85.1 51 70.6
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.3e-15 84.7 53 66.0
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 2.3e-15 84.7 51 70.6
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 2.3e-15 84.7 51 70.6
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.3e-15 84.7 42 83.3
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 2.3e-15 84.7 52 71.2
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 3.0e-15 84.3 48 72.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 3.0e-15 84.3 51 70.6
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.8e-15 83.2 51 70.6
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.8e-15 83.2 51 70.6
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-14 82.0 51 68.6
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.4e-14 80.9 51 66.7
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.4e-14 80.9 44 77.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.4e-14 80.5 51 66.7
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 5.7e-14 80.1 44 75.0
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 9.8e-14 79.3 52 61.5
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.2e-13 78.2 52 57.7
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.8e-13 77.8 52 55.8
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.7e-13 77.4 52 59.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 4.9e-13 77.0 54 64.8
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 3.2e-12 74.3 48 68.8
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 4.1e-12 73.9 52 55.8
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 7.0e-12 73.2 39 76.9
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.7e-11 71.2 53 54.7
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 1.0e-10 69.3 48 66.7
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 5.0e-10 67.0 32 84.4
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 8.6e-10 66.2 34 79.4
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.9e-09 65.1 41 68.3
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 9.5e-09 62.8 34 76.5
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.2e-08 62.4 43 62.8
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.6e-08 62.0 34 76.5
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.8e-08 61.2 34 73.5
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.7e-08 60.5 34 76.5
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.4e-07 58.9 34 67.6
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.8e-07 58.5 34 70.6
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 2.3e-07 58.2 35 65.7
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.3e-07 58.2 51 51.0
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.3e-07 58.2 34 70.6
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 4.0e-07 57.4 35 68.6
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 4.0e-07 57.4 31 80.6
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 5.2e-07 57.0 32 68.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.8e-07 56.6 44 56.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.2e-06 55.8 34 67.6
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.5e-06 55.5 43 60.5


User provided reference genes

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