Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23189 Trifolium pratense HOM05D001504 ORTHO05D001394 3.5e-45 184.5 87 100.0
Medtr7g080620 Medicago truncatula HOM05D001504 ORTHO05D001394 8.6e-36 153.3 81 86.4
Ca_08020_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 3.1e-33 144.8 86 77.9
arahy.Tifrunner.gnm1.ann1.MR7UVE Arachis hypogaea HOM05D002426 ORTHO05D002873 5.1e-28 127.5 76 77.6
Glyma.07G112100 Glycine max HOM05D001504 ORTHO05D001394 1.9e-22 109.0 84 61.9
Glyma.03G114500 Glycine max HOM05D001504 ORTHO05D001394 9.2e-22 106.7 83 60.2
Psat4g225480 Pisum sativum HOM05D001504 ORTHO05D001394 9.2e-22 106.7 80 60.0
TPR.G33114 Trifolium pratense HOM05D001504 ORTHO05D001394 1.2e-21 106.3 81 59.3
Ca_14053_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 1.6e-21 105.9 81 59.3
VMungo0331G1862 Vigna mungo HOM05D001504 ORTHO05D001394 3.5e-21 104.8 76 61.8
AL5G42650 Arabidopsis lyrata HOM05D001504 ORTHO05D001394 6.0e-21 104.0 80 56.2
Lj3g0023415 Lotus japonicus HOM05D001504 ORTHO05D001394 6.0e-21 104.0 81 58.0
Carub.0005s2713 Capsella rubella HOM05D001504 ORTHO05D001394 1.0e-20 103.2 80 55.0
Sp5g02820 Schrenkiella parvula HOM05D001504 ORTHO05D001394 1.0e-20 103.2 80 56.2
AT3G60400 Arabidopsis thaliana HOM05D001504 ORTHO05D001394 1.3e-20 102.8 80 56.2
Medtr8g005155 Medicago truncatula HOM05D001504 ORTHO05D001394 1.7e-20 102.4 80 57.5
Phvul.010G052250 Phaseolus vulgaris HOM05D001504 ORTHO05D001394 2.3e-20 102.1 76 60.5
CARHR170720 Cardamine hirsuta HOM05D001504 ORTHO05D001394 3.9e-20 101.3 80 57.5
CSS0010311 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 8.6e-20 100.1 76 63.2
CSS0011147 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 8.6e-20 100.1 76 63.2
arahy.Tifrunner.gnm1.ann1.CKY0R5 Arachis hypogaea HOM05D001504 ORTHO05D001394 1.5e-19 99.4 82 54.9
arahy.Tifrunner.gnm1.ann1.EKL24D Arachis hypogaea HOM05D001504 ORTHO05D001394 3.3e-19 98.2 82 53.7
BcaC07g40559 Brassica carinata HOM05D001504 ORTHO05D001394 4.3e-19 97.8 80 53.8
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 4.3e-19 97.8 80 53.8
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 4.3e-19 97.8 80 53.8
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 4.3e-19 97.8 80 53.8
BraA09t40697Z Brassica rapa HOM05D001504 ORTHO05D001394 4.3e-19 97.8 80 53.8
MD00G1041100 Malus domestica HOM05D001504 ORTHO05D001394 4.3e-19 97.8 82 57.3
Thecc.01G392100 Theobroma cacao HOM05D001504 ORTHO05D001394 4.3e-19 97.8 80 57.5
TWI59G0648 Tripterygium wilfordii HOM05D001504 ORTHO05D001394 4.3e-19 97.8 76 55.3
Prupe.2G125600 Prunus persica HOM05D001504 ORTHO05D001394 5.6e-19 97.4 77 61.0
Lj7A543T35 Lonicera japonica HOM05D001504 ORTHO05D001394 7.3e-19 97.1 82 56.1
Cpa.g.sc101.32 Carica papaya HOM05D001504 ORTHO05D001394 2.1e-18 95.5 80 56.2
Hma1.2p1_0729F.1_g209480 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 2.1e-18 95.5 80 57.5
Hma1.2p1_1740F.1_g300035 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 2.1e-18 95.5 80 57.5
Aa31LG1G21790 Aethionema arabicum HOM05D001504 ORTHO05D001394 2.8e-18 95.1 80 53.8
Duzib138G1733 Durio zibethinus HOM05D001504 ORTHO05D001394 2.8e-18 95.1 76 56.6
Thhalv10005866m.g Eutrema salsugineum HOM05D001504 ORTHO05D001394 2.8e-18 95.1 80 53.8
Atru.chr10.165 Acer truncatum HOM05D001504 ORTHO05D001394 3.6e-18 94.7 72 58.3
Ciclev10024277m.g Citrus clementina HOM05D001504 ORTHO05D001394 4.7e-18 94.4 80 53.8
MD09G1283700 Malus domestica HOM05D001504 ORTHO05D001394 8.1e-18 93.6 78 55.1
Cfa011093 Carpinus fangiana HOM05D001504 ORTHO05D001394 1.1e-17 93.2 80 53.8
Hma1.2p1_1740F.1_g300030 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 1.1e-17 93.2 73 58.9
THA.LOC104807619 Tarenaya hassleriana HOM05D001504 ORTHO05D001394 1.8e-17 92.4 80 51.2
Lsat_1_v5_gn_2_27920 Lactuca sativa HOM05D001504 ORTHO05D001394 3.1e-17 91.7 76 55.3
Haze_02802 Corylus avellana HOM05D001504 ORTHO05D001394 5.2e-17 90.9 80 53.8
CiPaw.13G028100 Carya illinoinensis HOM05D001504 ORTHO05D001394 1.2e-16 89.7 80 51.2
Manes.01G271800 Manihot esculenta HOM05D001504 ORTHO05D001394 2.0e-16 89.0 76 52.6
Oeu035668.1 Olea europaea HOM05D001504 ORTHO05D001394 2.0e-16 89.0 74 52.7
RcHm_v2.0_Chr1g0346761 Rosa chinensis HOM05D001504 ORTHO05D001394 2.0e-16 89.0 74 56.8
Sed0024200 Sechium edule HOM05D001504 ORTHO05D001394 2.6e-16 88.6 79 53.2
Actinidia12657 Actinidia chinensis HOM05D001504 ORTHO05D001394 3.4e-16 88.2 74 56.8
Lalb_Chr13g0290471 Lupinus albus HOM05D001504 ORTHO05D001394 4.4e-16 87.8 63 65.1
Nn1g00905 Nelumbo nucifera HOM05D001504 ORTHO05D001394 4.4e-16 87.8 81 50.6
FvH4_7g09760 Fragaria vesca HOM05D001504 ORTHO05D001394 5.8e-16 87.4 74 56.8
FAN06G4583 Fragaria x ananassa HOM05D001504 ORTHO05D001394 5.8e-16 87.4 74 56.8
COL.COLO4_12432 Corchorus olitorius HOM05D001504 ORTHO05D001394 9.9e-16 86.7 76 52.6
COL.COLO4_30713 Corchorus olitorius HOM05D001504 ORTHO05D001394 1.3e-15 86.3 75 52.0
Gorai.004G039400 Gossypium raimondii HOM05D001504 ORTHO05D001394 1.7e-15 85.9 76 51.3
Gohir.A08G029700 Gossypium hirsutum HOM05D001504 ORTHO05D001394 2.2e-15 85.5 76 51.3
Gohir.D08G040500 Gossypium hirsutum HOM05D001504 ORTHO05D001394 2.2e-15 85.5 76 51.3
Sc25g0000030 Simmondsia chinensis HOM05D001504 ORTHO05D001394 2.2e-15 85.5 79 50.6
FAN06G0357 Fragaria x ananassa HOM05D001504 ORTHO05D001394 8.4e-15 83.6 73 54.8
Actinidia12655 Actinidia chinensis HOM05D001504 ORTHO05D001394 1.1e-14 83.2 74 52.7
EL10Ac1g00788 Beta vulgaris HOM05D001504 ORTHO05D001394 1.1e-14 83.2 80 47.5
PGR042G1724 Punica granatum HOM05D001504 ORTHO05D001394 1.4e-14 82.8 80 48.8
FAN03G1087 Fragaria x ananassa HOM05D001504 ORTHO05D001394 1.9e-14 82.4 69 56.5
CANSAT11G0282 Cannabis sativa HOM05D001504 ORTHO05D001394 3.2e-14 81.6 82 50.0
FAN10G1053 Fragaria x ananassa HOM05D001504 ORTHO05D001394 4.2e-14 81.3 69 55.1
FAN10G2602 Fragaria x ananassa HOM05D001504 ORTHO05D001394 4.2e-14 81.3 69 55.1
DCAR_025073 Daucus carota HOM05D001504 ORTHO05D001394 5.4e-14 80.9 81 44.4
AUR62013723 Chenopodium quinoa HOM05D001504 ORTHO05D001394 7.1e-14 80.5 75 48.0
QL04p031168 Quercus lobata HOM05D001504 ORTHO05D001394 7.1e-14 80.5 72 54.2
AUR62023431 Chenopodium quinoa HOM05D001504 ORTHO05D001394 1.6e-13 79.3 75 48.0
Potri.014G044900 Populus trichocarpa HOM05D001504 ORTHO05D001394 3.5e-13 78.2 72 48.6
Sabra14G0032700 Salix brachista HOM05D001504 ORTHO05D001394 3.5e-13 78.2 81 46.9
HanXRQChr10g0288521 Helianthus annuus HOM05D001504 ORTHO05D001394 6.0e-13 77.4 70 50.0
Os07g0409400 Oryza sativa ssp. japonica HOM05D001504 ORTHO05D001394 1.3e-12 76.3 82 45.1
Migut.N01753 Erythranthe guttata HOM05D001504 ORTHO05D001394 3.0e-12 75.1 79 44.3
Migut.O00538 Erythranthe guttata HOM05D001504 ORTHO05D001394 3.0e-12 75.1 79 44.3
Aqoxy3G02800 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 3.9e-12 74.7 76 43.4
Aqoxy6G00569 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 6.6e-12 73.9 76 43.4
CANSAT35G0026 Cannabis sativa HOM05D001504 ORTHO05D001394 1.5e-11 72.8 76 43.4
Aqoxy3G02795 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 3.3e-11 71.6 76 42.1
MSTRG.28157 Avicennia marina HOM05D001504 ORTHO05D001394 5.6e-11 70.9 79 40.5
SalBow5G3598 Salvia bowleyana HOM05D001504 ORTHO05D001394 9.6e-11 70.1 72 44.4
Zm00001eb321620 Zea mays HOM05D001504 ORTHO05D001394 9.6e-11 70.1 79 43.0
Solyc01g090490.1 Solanum lycopersicum HOM05D001504 ORTHO05D001394 3.6e-10 68.2 68 48.5
Sopen01g036280 Solanum pennellii HOM05D001504 ORTHO05D001394 3.6e-10 68.2 78 42.3
Nitab4.5_0003553g0100 Nicotiana tabacum HOM05D001504 ORTHO05D001394 4.8e-10 67.8 80 42.5
SalBow5G2440 Salvia bowleyana HOM05D001504 ORTHO05D001394 4.8e-10 67.8 72 43.1
Nitab4.5_0002874g0060 Nicotiana tabacum HOM05D001504 ORTHO05D001394 6.2e-10 67.4 78 42.3
Peaxi162Scf00392g00028 Petunia axillaris HOM05D001504 ORTHO05D001394 8.1e-10 67.0 78 43.6
CAN.G362.14 Capsicum annuum HOM05D001504 ORTHO05D001394 1.1e-09 66.6 81 42.0
SGA_v2.0_scaffold43G16533 Striga asiatica HOM05D001504 ORTHO05D001394 6.9e-09 63.9 74 41.9
PGSC0003DMG400026040 Solanum tuberosum HOM05D001504 ORTHO05D001394 3.4e-08 61.6 78 39.7
Sed0013978 Sechium edule HOM05D001504 ORTHO05D001394 8.4e-07 57.0 55 49.1


User provided reference genes

Program Settings