Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.5e-226 789.3 425 100.0
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.4e-194 681.4 425 85.4
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 7.1e-192 674.1 391 85.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.5e-191 671.8 391 85.9
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.7e-190 669.5 391 84.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.3e-190 669.1 391 84.7
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.7e-182 642.9 392 81.6
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 6.6e-182 641.0 391 81.6
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 9.6e-181 637.1 391 81.6
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.8e-179 632.9 391 80.6
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 7.1e-176 620.9 391 78.3
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.2e-175 620.2 389 80.2
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.8e-174 616.3 392 78.1
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.5e-173 613.2 392 77.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 2.4e-171 605.9 392 76.8
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.4e-171 605.9 392 76.8
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 4.0e-171 605.1 392 77.0
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 4.0e-171 605.1 392 76.8
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.5e-170 603.2 392 76.0
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.0e-170 602.8 392 76.5
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 9.9e-170 600.5 392 77.0
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 4.9e-169 598.2 392 76.3
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.4e-168 596.7 392 76.0
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 3.2e-168 595.5 392 76.0
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 3.2e-168 595.5 393 76.3
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.6e-167 593.2 392 76.3
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 4.6e-167 591.7 392 75.0
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.0e-166 590.5 392 75.0
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 2.3e-166 589.3 392 75.3
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.3e-166 589.3 392 75.0
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.1e-166 588.2 392 74.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 5.1e-166 588.2 392 74.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 5.1e-166 588.2 389 76.3
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 6.7e-166 587.8 393 75.1
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 8.7e-166 587.4 392 74.7
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.1e-165 587.0 392 75.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.5e-165 586.6 392 75.5
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.5e-165 586.6 392 74.5
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 2.5e-165 585.9 392 74.7
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 4.3e-165 585.1 392 74.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 7.4e-165 584.3 392 73.7
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 7.4e-165 584.3 392 75.5
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 7.4e-165 584.3 386 75.6
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 3.7e-164 582.0 392 74.5
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 8.2e-164 580.9 392 74.0
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.1e-163 580.5 392 73.5
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.4e-163 580.1 391 74.4
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.8e-163 579.7 390 74.9
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 2.4e-163 579.3 389 74.0
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.0e-163 578.6 409 71.9
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.2e-162 577.0 392 74.5
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.5e-162 576.6 392 74.5
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.0e-162 576.2 392 72.4
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.4e-162 575.5 394 73.9
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.8e-161 572.0 394 73.4
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.9e-161 571.6 390 73.1
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 6.5e-161 571.2 394 74.4
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.9e-160 569.7 392 71.9
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 7.1e-160 567.8 392 71.9
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 9.3e-160 567.4 393 73.8
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.2e-159 567.0 393 73.5
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.6e-159 566.6 392 73.2
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.0e-158 563.9 372 75.5
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.9e-158 562.0 392 72.4
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 3.9e-158 562.0 396 72.5
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 6.7e-158 561.2 393 72.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.7e-158 561.2 389 72.2
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 6.7e-158 561.2 389 72.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.3e-157 558.9 389 71.7
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 5.7e-157 558.1 389 71.5
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 7.4e-157 557.8 389 71.5
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 9.7e-157 557.4 389 71.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 9.7e-157 557.4 389 71.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.7e-157 557.4 372 74.7
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.8e-156 555.8 389 71.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.7e-156 555.4 392 72.4
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 4.8e-156 555.1 389 71.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 8.2e-156 554.3 389 71.2
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 8.2e-156 554.3 372 74.2
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.4e-155 553.5 391 71.6
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 3.1e-155 552.4 394 71.6
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 3.1e-155 552.4 393 70.0
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 4.1e-155 552.0 389 70.7
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.5e-154 550.1 392 69.4
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.0e-154 549.7 389 70.7
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 5.9e-154 548.1 389 70.7
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 5.9e-154 548.1 389 70.4
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 5.9e-154 548.1 389 70.4
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 5.9e-154 548.1 389 70.4
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 5.9e-154 548.1 372 74.5
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.8e-153 545.4 367 74.9
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 6.5e-153 544.7 389 70.2
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 6.5e-153 544.7 389 70.2
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 8.5e-153 544.3 389 69.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 8.5e-153 544.3 389 69.9
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-152 543.9 392 69.4
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.4e-152 543.5 389 69.9
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.9e-152 543.1 389 69.9
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.2e-152 542.3 392 69.1
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 3.2e-152 542.3 389 70.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.5e-152 541.6 389 69.9
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.5e-152 541.6 372 72.3
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 9.4e-152 540.8 389 69.9
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.2e-151 540.4 389 68.9
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.2e-151 540.4 393 71.0
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-151 540.4 371 72.2
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.1e-151 539.7 390 69.7
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.1e-151 538.1 389 69.7
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 8.8e-150 534.3 372 73.1
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.5e-149 533.5 385 71.4
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.9e-149 533.1 372 71.8
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 5.7e-149 531.6 378 71.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 9.7e-149 530.8 367 71.9
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 3.7e-148 528.9 375 71.2
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 8.2e-148 527.7 335 78.5
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.1e-147 527.3 392 69.1
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 5.3e-147 525.0 376 68.6
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.5e-146 521.9 376 68.1
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 8.5e-145 517.7 369 69.9
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.1e-144 517.3 437 62.2
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.2e-143 513.8 400 68.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.3e-142 509.6 392 64.8
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 2.3e-142 509.6 354 71.8
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 3.0e-142 509.2 376 70.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.5e-141 506.9 392 64.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.7e-140 503.4 421 65.1
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.2e-140 503.1 392 66.1
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.2e-140 503.1 396 70.7
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 6.3e-140 501.5 393 66.7
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.2e-138 497.3 337 76.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.3e-137 493.8 389 65.8
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.6e-135 486.9 379 66.2
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.6e-133 479.6 322 73.9
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 6.3e-132 474.9 374 61.2
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.1e-131 472.6 320 73.8
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.1e-128 464.2 394 58.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.9e-128 463.4 375 60.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 6.7e-126 454.9 404 61.4
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.8e-126 454.5 394 59.4
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 3.7e-124 449.1 376 64.6
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 6.3e-124 448.4 399 58.6
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.7e-122 443.0 416 59.9
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 8.5e-121 438.0 324 67.9
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.8e-118 430.3 392 56.9
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 4.4e-117 425.6 378 57.1
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 6.3e-116 421.8 404 55.0
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.9e-113 412.9 364 61.5
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.8e-107 393.7 297 67.0
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.1e-107 392.9 335 61.5
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.4e-102 377.5 231 78.8
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.1e-99 367.9 271 66.1
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.4e-99 367.5 241 75.5
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.2e-85 321.2 390 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.4e-83 314.3 409 43.5
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.3e-81 307.0 211 73.9
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.1e-78 298.1 390 45.4
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.1e-75 285.4 196 69.4
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.2e-71 274.6 318 52.2
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.4e-70 270.4 272 50.4
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 1.6e-63 247.7 151 78.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.6e-63 246.5 302 46.0
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.7e-60 237.7 336 42.3
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.5e-58 229.9 195 60.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 9.0e-54 215.3 243 47.3
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.6e-50 204.5 219 48.9
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.1e-48 198.4 117 82.1
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.4e-46 190.7 391 36.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 9.0e-46 188.7 182 54.4
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.1e-34 151.0 88 83.0
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.1e-30 137.1 75 88.0
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 5.9e-29 132.9 96 67.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 6.3e-23 112.8 61 85.2
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 1.1e-19 102.1 58 87.9
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.2e-19 100.5 66 69.7
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.7e-18 97.4 54 81.5
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.9e-17 93.6 75 60.0
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 4.8e-15 86.7 60 70.0
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.3e-12 78.6 84 47.6
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.9e-11 74.7 85 44.7
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 3.2e-11 73.9 95 41.1
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 5.5e-11 73.2 123 38.2


User provided reference genes

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