Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.6e-294 1015.4 514 100.0
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 6.8e-282 973.4 514 95.5
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 4.3e-268 927.5 513 90.4
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 8.1e-267 923.3 513 89.9
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.7e-264 915.6 513 87.9
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 4.2e-255 884.4 513 86.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.3e-251 872.8 513 84.2
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 4.2e-247 857.8 511 83.8
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 9.3e-247 856.7 512 82.6
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 9.3e-247 856.7 512 82.6
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.3e-245 852.8 515 83.1
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 7.4e-244 847.0 512 81.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.3e-243 846.3 512 81.4
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.2e-238 829.7 513 81.3
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 4.5e-225 784.6 510 75.7
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.6e-222 776.2 511 74.8
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 3.0e-221 771.9 509 73.5
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.5e-220 769.6 508 75.2
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 3.3e-220 768.5 509 73.7
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 4.4e-220 768.1 507 72.4
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.4e-220 768.1 507 72.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.2e-219 765.8 481 75.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.3e-219 764.2 510 73.9
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.3e-219 764.2 507 72.4
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.1e-218 763.5 494 75.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 4.1e-218 761.5 483 76.0
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 5.3e-218 761.1 489 76.7
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.0e-217 759.2 484 75.6
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 4.5e-217 758.1 511 72.6
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.0e-216 756.9 510 72.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.0e-216 756.9 510 73.1
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 6.5e-216 754.2 509 72.9
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.1e-215 753.4 509 72.9
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 6.1e-214 747.7 509 70.9
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.0e-213 745.3 507 72.2
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 3.9e-213 745.0 507 72.2
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 5.2e-213 744.6 490 72.7
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 4.4e-212 741.5 510 71.4
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.7e-211 739.6 509 69.4
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.7e-211 738.4 503 72.0
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 4.8e-211 738.0 482 74.3
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.1e-210 736.9 512 71.5
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 4.5e-209 731.5 512 69.5
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 5.9e-209 731.1 510 71.4
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.0e-208 730.3 474 74.1
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 2.2e-208 729.2 511 69.7
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 3.8e-208 728.4 485 72.6
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.9e-207 726.1 509 71.1
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 2.5e-207 725.7 510 71.6
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 5.5e-207 724.5 509 68.8
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 4.7e-206 721.5 479 71.8
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 8.0e-206 720.7 491 71.3
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.0e-205 720.3 511 69.5
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.0e-205 720.3 509 68.8
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 4.0e-205 718.4 477 73.6
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-204 716.5 504 69.2
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.0e-204 716.1 473 71.9
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.2e-203 712.6 511 68.1
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.6e-201 706.4 468 73.1
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.7e-201 705.7 511 68.7
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.5e-201 705.3 481 69.6
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.5e-201 704.9 507 66.9
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 7.7e-201 704.1 510 67.8
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.7e-201 704.1 450 74.7
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.7e-200 703.0 481 69.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.1e-199 700.3 510 65.3
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.2e-199 698.4 509 67.6
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 5.5e-199 698.0 507 66.9
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 9.4e-199 697.2 478 69.2
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 9.4e-199 697.2 482 69.9
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 2.1e-198 696.0 442 76.9
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.7e-198 695.7 485 68.2
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.7e-198 695.7 490 68.0
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 8.0e-198 694.1 485 68.2
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.0e-197 693.7 504 66.3
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.0e-197 693.7 511 67.5
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.0e-197 691.8 485 68.5
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 6.8e-197 691.0 505 67.7
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 2.0e-196 689.5 482 68.3
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 2.0e-196 689.5 482 68.3
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 2.0e-196 689.5 482 68.3
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.0e-196 689.5 508 66.5
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 3.4e-196 688.7 510 67.1
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.4e-196 688.3 484 66.9
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 7.5e-196 687.6 509 65.2
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 2.4e-194 682.6 508 65.6
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.6e-190 668.7 440 72.7
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.8e-189 666.4 440 73.2
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 5.2e-189 664.8 442 71.3
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.0e-188 662.9 484 65.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.7e-187 659.8 492 66.3
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.2e-187 659.4 491 64.6
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.9e-187 658.3 466 67.4
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.8e-186 656.4 480 65.6
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.4e-186 656.0 473 66.0
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 3.2e-186 655.6 456 69.5
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 1.2e-182 643.7 465 65.8
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 8.0e-182 641.0 442 70.8
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.3e-181 639.4 406 74.6
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 6.8e-181 637.9 474 67.7
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 5.8e-180 634.8 493 62.5
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.9e-179 632.5 456 66.7
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 8.3e-179 630.9 491 62.9
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 7.0e-178 627.9 508 63.2
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.0e-173 612.1 471 63.9
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 9.8e-172 607.4 468 64.5
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.2e-170 602.4 385 73.5
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 9.2e-170 600.9 394 73.9
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 2.3e-168 596.3 479 63.7
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.7e-163 578.9 442 65.8
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 7.1e-162 574.7 482 62.9
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.2e-161 573.9 350 83.1
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.2e-153 547.4 480 57.5
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.8e-149 533.5 471 56.9
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 9.9e-148 527.7 503 54.3
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.3e-142 510.8 521 51.4
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.1e-142 510.0 300 86.3
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.0e-141 505.8 300 85.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.0e-136 491.1 329 71.4
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.6e-134 483.8 319 73.4
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.0e-131 474.6 338 66.9
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 2.7e-129 466.5 468 50.9
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.6e-121 440.7 470 49.8
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 6.1e-113 412.1 380 56.3
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.5e-111 406.8 281 69.8
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 3.6e-97 359.8 250 71.6
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.4e-93 347.8 556 40.5
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.4e-93 347.1 607 36.6
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 4.7e-81 306.2 470 39.6
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.0e-75 288.5 466 39.9
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 6.6e-67 259.2 211 63.5
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.8e-64 251.1 154 76.6
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 8.6e-51 205.7 241 50.2
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.3e-46 191.8 175 56.6
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.3e-38 165.2 307 38.1
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.4e-37 161.0 108 77.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.4e-37 161.0 244 40.6
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.1e-33 147.9 119 57.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 4.2e-29 133.7 87 64.4
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.1e-26 125.6 100 61.0
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.6e-20 105.1 68 83.8
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.5e-20 104.0 69 66.7
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.8e-19 101.7 90 57.8
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.3e-17 95.5 70 62.9
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 7.6e-07 59.7 36 75.0


User provided reference genes

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