Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 3.5e-115 418.3 214 100.0
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 3.4e-102 375.2 214 89.3
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 1.9e-92 342.8 215 83.7
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 1.6e-88 329.7 243 72.4
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 1.3e-85 320.1 219 76.7
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 1.1e-84 317.0 216 77.3
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 2.1e-83 312.8 219 76.3
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 4.5e-78 295.0 219 72.1
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 9.1e-71 270.8 215 70.2
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 2.0e-65 253.1 214 67.3
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 7.5e-57 224.6 214 58.4
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 1.4e-55 220.3 213 57.7
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 9.1e-55 217.6 219 58.9
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 4.5e-54 215.3 195 60.5
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 1.3e-53 213.8 216 57.4
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 1.7e-53 213.4 214 57.9
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 2.2e-53 213.0 196 56.6
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.2e-53 213.0 218 58.7
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.2e-53 213.0 232 56.9
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 5.0e-53 211.8 221 59.3
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.1e-52 210.7 181 61.3
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.5e-52 210.3 194 57.7
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 8.0e-51 204.5 210 56.2
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 3.0e-50 202.6 118 83.9
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 4.0e-50 202.2 179 60.3
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 6.8e-50 201.4 214 55.1
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 6.8e-50 201.4 192 58.9
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 8.8e-50 201.1 146 72.6
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 8.8e-50 201.1 183 57.9
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 8.8e-50 201.1 203 56.7
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 2.6e-49 199.5 221 52.9
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 3.4e-49 199.1 120 82.5
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 4.4e-49 198.7 176 60.8
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 7.5e-49 198.0 189 58.7
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 7.5e-49 198.0 122 81.1
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 9.8e-49 197.6 215 53.0
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 9.8e-49 197.6 220 52.7
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 1.7e-48 196.8 214 55.1
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.7e-48 196.8 214 56.5
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 3.7e-48 195.7 173 59.0
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 3.7e-48 195.7 214 53.7
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 3.7e-48 195.7 216 54.6
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 8.3e-48 194.5 178 61.8
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 1.4e-47 193.7 177 58.2
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 3.1e-47 192.6 185 57.8
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 4.1e-47 192.2 197 57.9
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 9.2e-47 191.0 179 58.7
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 9.2e-47 191.0 214 55.6
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 9.2e-47 191.0 116 81.9
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 2.0e-46 189.9 186 58.1
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 2.0e-46 189.9 186 58.1
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 2.0e-46 189.9 130 71.5
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 2.0e-46 189.9 206 52.4
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 2.7e-46 189.5 115 82.6
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.7e-46 189.5 170 61.8
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 3.5e-46 189.1 118 80.5
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 5.9e-46 188.3 113 82.3
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 5.9e-46 188.3 121 78.5
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 1.0e-45 187.6 141 70.2
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 1.3e-45 187.2 217 55.8
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.3e-45 186.4 180 58.3
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 2.9e-45 186.0 104 90.4
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 2.9e-45 186.0 120 79.2
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 3.8e-45 185.7 172 61.0
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 5.0e-45 185.3 181 57.5
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 6.6e-45 184.9 221 50.2
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.5e-44 183.7 172 60.5
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 1.5e-44 183.7 172 58.7
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 1.9e-44 183.3 183 59.0
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 1.9e-44 183.3 159 62.9
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 3.3e-44 182.6 103 88.3
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 4.3e-44 182.2 175 58.9
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 5.6e-44 181.8 103 84.5
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 1.2e-43 180.6 104 83.7
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 1.6e-43 180.3 118 79.7
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 4.7e-43 178.7 144 68.8
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 4.7e-43 178.7 144 68.8
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 4.7e-43 178.7 144 68.8
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 4.7e-43 178.7 141 66.7
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 4.7e-43 178.7 143 67.8
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 4.7e-43 178.7 108 83.3
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 6.1e-43 178.3 118 77.1
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 6.1e-43 178.3 125 74.4
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 6.1e-43 178.3 117 81.2
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.1e-43 178.3 104 83.7
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 8.0e-43 177.9 117 80.3
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 1.0e-42 177.6 147 66.7
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 1.0e-42 177.6 107 85.0
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 1.0e-42 177.6 103 85.4
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 1.8e-42 176.8 117 80.3
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 1.8e-42 176.8 141 67.4
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 4.0e-42 175.6 144 66.0
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 5.2e-42 175.3 100 88.0
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 7.5e-41 171.4 102 79.4
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 2.9e-40 169.5 147 63.9
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 2.9e-40 169.5 214 48.6
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 4.9e-40 168.7 108 75.9
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.4e-40 168.3 104 80.8
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 6.4e-40 168.3 108 75.9
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 1.6e-38 163.7 102 79.4
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 5.0e-37 158.7 109 72.5
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 2.3e-34 149.8 106 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 6.8e-34 148.3 107 67.3
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 1.2e-33 147.5 120 61.7
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.2e-33 147.5 104 67.3
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 6.6e-29 131.7 82 80.5
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.9e-28 130.2 74 85.1
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 1.6e-27 127.1 70 87.1
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 6.2e-27 125.2 98 58.2
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 2.2e-24 116.7 176 46.0
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 6.2e-19 98.6 93 51.6
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 2.0e-17 93.6 62 75.8
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 2.6e-17 93.2 55 83.6
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 2.9e-16 89.7 44 95.5
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 4.9e-16 89.0 77 54.5
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.5e-12 76.6 50 70.0
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 3.6e-11 72.8 44 79.5


User provided reference genes

Program Settings