Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23131 Trifolium pratense HOM05D003295 ORTHO05D004003 4.2e-30 134.0 67 100.0
TPR.G1214 Trifolium pratense HOM05D003295 ORTHO05D004003 1.1e-22 109.4 57 93.0
Ca_22313_v3 Cicer arietinum L. HOM05D003295 ORTHO05D004003 1.2e-21 105.9 57 91.2
Psat0s3048g0160 Pisum sativum HOM05D003295 ORTHO05D004003 1.2e-21 105.9 57 91.2
Medtr7g053330 Medicago truncatula HOM05D003295 ORTHO05D004003 2.1e-21 105.1 57 91.2
Lj1g0018629 Lotus japonicus HOM05D003295 ORTHO05D004003 3.5e-21 104.4 57 89.5
Sed0020610 Sechium edule HOM05D003295 ORTHO05D004003 3.5e-21 104.4 57 89.5
CSS0003522 Camellia sinensis var. sinensis HOM05D003295 ORTHO05D004003 4.6e-21 104.0 57 87.7
Phvul.008G133900 Phaseolus vulgaris HOM05D003295 ORTHO05D004003 4.6e-21 104.0 57 87.7
Actinidia01987 Actinidia chinensis HOM05D003295 ORTHO05D004003 1.3e-20 102.4 57 86.0
VMungo1383G2302 Vigna mungo HOM05D003295 ORTHO05D004003 1.8e-20 102.1 57 86.0
Cpa.g.sc14.163 Carica papaya HOM05D003295 ORTHO05D004003 2.3e-20 101.7 57 87.7
Ciclev10011465m.g Citrus clementina HOM05D003295 ORTHO05D004003 2.3e-20 101.7 57 87.7
Glyma.08G346200 Glycine max HOM05D003295 ORTHO05D004003 2.3e-20 101.7 57 86.0
Glyma.18G156500 Glycine max HOM05D003295 ORTHO05D004003 2.3e-20 101.7 57 86.0
Lalb_Chr03g0041311 Lupinus albus HOM05D003295 ORTHO05D004003 2.3e-20 101.7 57 86.0
CDE04G1519 Ceratophyllum demersum HOM05D003295 ORTHO05D004003 3.0e-20 101.3 57 87.7
arahy.Tifrunner.gnm1.ann1.9C1MNQ Arachis hypogaea HOM05D003295 ORTHO05D004003 5.1e-20 100.5 57 84.2
arahy.Tifrunner.gnm1.ann1.Q2QQQQ Arachis hypogaea HOM05D003295 ORTHO05D004003 5.1e-20 100.5 57 84.2
CiPaw.04G057100 Carya illinoinensis HOM05D003295 ORTHO05D004003 5.1e-20 100.5 57 84.2
Cc07_g03950 Coffea canephora HOM05D003295 ORTHO05D004003 5.1e-20 100.5 57 84.2
CANSAT64G1717 Cannabis sativa HOM05D003295 ORTHO05D004003 6.7e-20 100.1 57 84.2
Glyma.16G087200 Glycine max HOM05D003295 ORTHO05D004003 6.7e-20 100.1 57 84.2
MD09G1064100 Malus domestica HOM05D003295 ORTHO05D004003 6.7e-20 100.1 57 84.2
MD17G1057400 Malus domestica HOM05D003295 ORTHO05D004003 6.7e-20 100.1 57 84.2
MSTRG.3010 Avicennia marina HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
MSTRG.3351 Avicennia marina HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
CSS0007751 Camellia sinensis var. sinensis HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
CSS0035256 Camellia sinensis var. sinensis HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
CiPaw.03G090100 Carya illinoinensis HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
Prupe.3G256900 Prunus persica HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
QL02p067876 Quercus lobata HOM05D003295 ORTHO05D004003 8.7e-20 99.8 57 84.2
MSTRG.15453 Avicennia marina HOM05D003295 ORTHO05D004003 1.1e-19 99.4 57 84.2
Eucgr.H00078 Eucalyptus grandis HOM05D003295 ORTHO05D004003 1.1e-19 99.4 57 86.0
Manes.01G097600 Manihot esculenta HOM05D003295 ORTHO05D004003 1.1e-19 99.4 57 86.0
Manes.02G053700 Manihot esculenta HOM05D003295 ORTHO05D004003 1.1e-19 99.4 57 86.0
Rhsim10G0043800 Rhododendron simsii HOM05D003295 ORTHO05D004003 1.1e-19 99.4 57 82.5
SalBow1G0252 Salvia bowleyana HOM05D003295 ORTHO05D004003 1.1e-19 99.4 57 84.2
ClCG07G007340 Citrullus lanatus HOM05D003295 ORTHO05D004003 1.5e-19 99.0 57 84.2
MELO3C016067.2 Cucumis melo HOM05D003295 ORTHO05D004003 1.5e-19 99.0 57 84.2
CsaV3_4G008760 Cucumis sativus L. HOM05D003295 ORTHO05D004003 1.5e-19 99.0 57 84.2
unitig_747.g21845 Utricularia gibba HOM05D003295 ORTHO05D004003 1.5e-19 99.0 57 84.2
Cfa007647 Carpinus fangiana HOM05D003295 ORTHO05D004003 1.9e-19 98.6 57 82.5
DCAR_011045 Daucus carota HOM05D003295 ORTHO05D004003 1.9e-19 98.6 57 84.2
Gohir.A11G072200 Gossypium hirsutum HOM05D003295 ORTHO05D004003 1.9e-19 98.6 57 86.0
Gohir.D11G076300 Gossypium hirsutum HOM05D003295 ORTHO05D004003 1.9e-19 98.6 57 86.0
Gorai.007G081900 Gossypium raimondii HOM05D003295 ORTHO05D004003 1.9e-19 98.6 57 86.0
Lju41A4G62 Lonicera japonica HOM05D003295 ORTHO05D004003 1.9e-19 98.6 56 85.7
SEGI_03951 Sequoiadendron giganteum HOM05D003295 ORTHO05D004003 1.9e-19 98.6 57 86.0
Lalb_Chr01g0022051 Lupinus albus HOM05D003295 ORTHO05D004003 2.5e-19 98.2 57 84.2
Phvul.010G024900 Phaseolus vulgaris HOM05D003295 ORTHO05D004003 2.5e-19 98.2 57 82.5
Atru.chr1.3425 Acer truncatum HOM05D003295 ORTHO05D004003 3.3e-19 97.8 57 84.2
Atru.chr8.417 Acer truncatum HOM05D003295 ORTHO05D004003 3.3e-19 97.8 57 84.2
Ah.16g106000 Amaranthus hybridus HOM05D003295 ORTHO05D004003 3.3e-19 97.8 57 80.7
ATR0064G024 Amborella trichopoda HOM05D003295 ORTHO05D004003 3.3e-19 97.8 57 84.2
HanXRQChr08g0211871 Helianthus annuus HOM05D003295 ORTHO05D004003 3.3e-19 97.8 57 82.5
PGR102G1979 Punica granatum HOM05D003295 ORTHO05D004003 3.3e-19 97.8 57 84.2
Lsat_1_v5_gn_8_47580 Lactuca sativa HOM05D003295 ORTHO05D004003 4.3e-19 97.4 57 82.5
Dinv34954 Davidia involucrata HOM05D003295 ORTHO05D011096 5.6e-19 97.1 57 82.5
Migut.K01281 Erythranthe guttata HOM05D003295 ORTHO05D004003 5.6e-19 97.1 57 80.7
Oeu000865.2 Olea europaea HOM05D003295 ORTHO05D004003 5.6e-19 97.1 57 82.5
Lsat_1_v5_gn_4_12421 Lactuca sativa HOM05D003295 ORTHO05D004003 7.4e-19 96.7 57 82.5
Lj4C117T4 Lonicera japonica HOM05D003295 ORTHO05D004003 7.4e-19 96.7 57 78.9
Nn3g17409 Nelumbo nucifera HOM05D003295 ORTHO05D004003 7.4e-19 96.7 57 82.5
Sc20g0001850 Simmondsia chinensis HOM05D003295 ORTHO05D004003 7.4e-19 96.7 57 82.5
VMungo0331G1826 Vigna mungo HOM05D003295 ORTHO05D004003 7.4e-19 96.7 57 82.5
MBI19_g19066_MAGBIO Magnolia biondii HOM05D003295 ORTHO05D004003 9.6e-19 96.3 57 82.5
Duzib147G0263 Durio zibethinus HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Duzib187G0484 Durio zibethinus HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Duzib264G1042 Durio zibethinus HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Gohir.A09G010400 Gossypium hirsutum HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Gohir.D09G009500 Gossypium hirsutum HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Gorai.006G011200 Gossypium raimondii HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Thecc.04G092700 Theobroma cacao HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
TAR371G0606 Trochodendron aralioides HOM05D003295 ORTHO05D004003 1.3e-18 95.9 57 82.5
Haze_14446 Corylus avellana HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 80.7
Solyc02g088700.4 Solanum lycopersicum HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 80.7
Sopen02g033410 Solanum pennellii HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 80.7
PGSC0003DMG400001355 Solanum tuberosum HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 80.7
SGA_v2.0_scaffold154G37095 Striga asiatica HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 80.7
vmacro01094 Vaccinium macrocarpon HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 78.9
vmacro05652 Vaccinium macrocarpon HOM05D003295 ORTHO05D004003 1.6e-18 95.5 57 78.9
Migut.H00639 Erythranthe guttata HOM05D003295 ORTHO05D004003 2.1e-18 95.1 57 80.7
MBI16_g11661_MAGBIO Magnolia biondii HOM05D003295 ORTHO05D004003 2.1e-18 95.1 57 80.7
TAR629G1991 Trochodendron aralioides HOM05D003295 ORTHO05D004003 2.1e-18 95.1 57 80.7
CSS0002131 Camellia sinensis var. sinensis HOM05D003295 ORTHO05D024739 2.8e-18 94.7 56 82.1
CSS0006231 Camellia sinensis var. sinensis HOM05D003295 ORTHO05D004003 2.8e-18 94.7 56 82.1
HanXRQChr12g0362991 Helianthus annuus HOM05D003295 ORTHO05D004003 2.8e-18 94.7 57 78.9
RcHm_v2.0_Chr2g0166151 Rosa chinensis HOM05D003295 ORTHO05D004003 2.8e-18 94.7 57 80.7
TWI32G0949 Tripterygium wilfordii HOM05D003295 ORTHO05D004003 2.8e-18 94.7 57 82.5
CDE02G3191 Ceratophyllum demersum HOM05D003295 ORTHO05D004003 3.6e-18 94.4 57 80.7
Mapoly0009s0206 Marchantia polymorpha HOM05D003295 ORTHO05D004003 3.6e-18 94.4 57 80.7
AUR62037753 Chenopodium quinoa HOM05D003295 ORTHO05D004003 4.8e-18 94.0 57 80.7
Dinv16718 Davidia involucrata HOM05D003295 ORTHO05D004003 4.8e-18 94.0 57 78.9
Potri.004G118900 Populus trichocarpa HOM05D003295 ORTHO05D004003 4.8e-18 94.0 57 80.7
Potri.017G092400 Populus trichocarpa HOM05D003295 ORTHO05D004003 4.8e-18 94.0 57 80.7
Sabra04G0068800 Salix brachista HOM05D003295 ORTHO05D004003 4.8e-18 94.0 57 78.9
Sabra17G0081500 Salix brachista HOM05D003295 ORTHO05D004003 4.8e-18 94.0 57 80.7
BcaC05g30323 Brassica carinata HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
BcaC09g47684 Brassica carinata HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
BNapus_Darmor_BZH_scaffold_113p00140 Brassica napus HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
BNapus_Darmor_BZH_scaffold_97p00030 Brassica napus HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
BolC1t05921H Brassica oleracea HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
BraA01t04631Z Brassica rapa HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
CDE05G2680 Ceratophyllum demersum HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 80.7
COL.COLO4_21398 Corchorus olitorius HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 82.5
FvH4_6g47100 Fragaria vesca HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 80.7
SHI25773 Sapria himalayana HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
HPP92_006056 Vanilla planifolia HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 78.9
HPP92_013435 Vanilla planifolia HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 80.7
HPP92_027113 Vanilla planifolia HOM05D003295 ORTHO05D004003 6.2e-18 93.6 57 80.7
CAN.G206.214 Capsicum annuum HOM05D003295 ORTHO05D004003 8.1e-18 93.2 57 78.9
FAN02G0360 Fragaria x ananassa HOM05D003295 ORTHO05D004003 8.1e-18 93.2 57 80.7
FAN05G1568 Fragaria x ananassa HOM05D003295 ORTHO05D004003 8.1e-18 93.2 57 80.7
FAN09G4456 Fragaria x ananassa HOM05D003295 ORTHO05D004003 8.1e-18 93.2 57 80.7
Nitab4.5_0000565g0210 Nicotiana tabacum HOM05D003295 ORTHO05D004003 8.1e-18 93.2 57 78.9
Nitab4.5_0010051g0030 Nicotiana tabacum HOM05D003295 ORTHO05D004003 8.1e-18 93.2 57 78.9
AagrBONN_evm.TU.Sc2ySwM_228.4053 Anthoceros agrestis HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
Aqoxy3G00493 Aquilegia oxysepala HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
BcaC05g30374 Brassica carinata HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
A05p44910 Brassica napus HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
BolC5t35110H Brassica oleracea HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
BraA05t23166Z Brassica rapa HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
ECA233G3242 Erigeron canadensis HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
Sp3g01150 Schrenkiella parvula HOM05D003295 ORTHO05D004003 1.1e-17 92.8 57 78.9
EL10Ac2g03303 Beta vulgaris HOM05D003295 ORTHO05D004003 1.4e-17 92.4 57 80.7
AUR62018251 Chenopodium quinoa HOM05D003295 ORTHO05D004003 1.4e-17 92.4 57 78.9
Hma1.2p1_0357F.1_g134540 Hydrangea macrophylla HOM05D003295 ORTHO05D004003 1.4e-17 92.4 57 78.9
Lj6A781T30 Lonicera japonica HOM05D003295 ORTHO05D004003 1.4e-17 92.4 57 77.2
PSO541G2235 Papaver somniferum HOM05D003295 ORTHO05D004003 1.4e-17 92.4 57 77.2
PSO675G8937 Papaver somniferum HOM05D003295 ORTHO05D004003 1.4e-17 92.4 57 77.2
Ah.10g032630 Amaranthus hybridus HOM05D003295 ORTHO05D004003 1.8e-17 92.0 57 78.9
AT3G02090 Arabidopsis thaliana HOM05D003295 ORTHO05D004003 1.8e-17 92.0 57 78.9
SMO117G0298 Selaginella moellendorffii HOM05D003295 ORTHO05D004003 1.8e-17 92.0 57 78.9
Actinidia28640 Actinidia chinensis HOM05D003295 ORTHO05D004003 2.4e-17 91.7 56 80.4
Nitab4.5_0002362g0060 Nicotiana tabacum HOM05D003295 ORTHO05D004003 3.1e-17 91.3 57 77.2
AL3G11320 Arabidopsis lyrata HOM05D003295 ORTHO05D004003 4.0e-17 90.9 57 77.2
C09p75490 Brassica napus HOM05D003295 ORTHO05D004003 4.0e-17 90.9 57 77.2
Thhalv10020493m.g Eutrema salsugineum HOM05D003295 ORTHO05D004003 4.0e-17 90.9 57 77.2
Sopen05g007290 Solanum pennellii HOM05D003295 ORTHO05D004003 4.0e-17 90.9 57 77.2
PGSC0003DMG400028380 Solanum tuberosum HOM05D003295 ORTHO05D004003 4.0e-17 90.9 57 77.2
THA.LOC104821004 Tarenaya hassleriana HOM05D003295 ORTHO05D004003 4.0e-17 90.9 57 77.2
Aa31LG5G12630 Aethionema arabicum HOM05D003295 ORTHO05D004003 6.9e-17 90.1 57 77.2
Peaxi162Scf00166g00530 Petunia axillaris HOM05D003295 ORTHO05D004003 6.9e-17 90.1 57 75.4
Gorai.012G049500 Gossypium raimondii HOM05D003295 ORTHO05D004003 9.0e-17 89.7 57 78.9
PGR031G1129 Punica granatum HOM05D001325 ORTHO05D001540 9.0e-17 89.7 57 77.2
Nitab4.5_0008450g0020 Nicotiana tabacum HOM05D003295 ORTHO05D004003 1.2e-16 89.4 57 75.4
Oeu028262.3 Olea europaea HOM05D003295 ORTHO05D004003 1.2e-16 89.4 57 75.4
Os03g0212700 Oryza sativa ssp. japonica HOM05D003295 ORTHO05D004003 1.2e-16 89.4 57 77.2
CAN.G616.8 Capsicum annuum HOM05D003295 ORTHO05D004003 1.5e-16 89.0 57 77.2
Gohir.D04G044200 Gossypium hirsutum HOM05D003295 ORTHO05D004003 1.5e-16 89.0 57 78.9
Zm00001eb400330 Zea mays HOM05D003295 ORTHO05D004003 1.5e-16 89.0 57 71.9
Carub.0003s0120 Capsella rubella HOM05D003295 ORTHO05D004003 2.0e-16 88.6 57 75.4
CARHR076050 Cardamine hirsuta HOM05D003295 ORTHO05D004003 2.0e-16 88.6 57 75.4
THA.LOC104802968 Tarenaya hassleriana HOM05D003295 ORTHO05D004003 2.0e-16 88.6 57 75.4
CBR_g22269 Chara braunii HOM05D003295 ORTHO05D004003 2.6e-16 88.2 57 77.2
Peaxi162Scf00314g00228 Petunia axillaris HOM05D003295 ORTHO05D004003 2.6e-16 88.2 57 75.4
Pp3c16_17660 Physcomitrium patens HOM05D003295 ORTHO05D004003 2.6e-16 88.2 57 73.7
Hund12049 Selenicereus undatus HOM05D003295 ORTHO05D004003 2.6e-16 88.2 57 77.2
Solyc05g012480.4 Solanum lycopersicum HOM05D003295 ORTHO05D004003 3.4e-16 87.8 56 76.8
Aqoxy3G03592 Aquilegia oxysepala HOM05D003295 ORTHO05D004003 1.3e-15 85.9 57 71.9
Zm00001eb008490 Zea mays HOM05D003295 ORTHO05D004003 1.3e-15 85.9 57 70.2
Gohir.A05G371500 Gossypium hirsutum HOM05D003295 ORTHO05D004003 1.7e-15 85.5 57 75.4
ATR0749G047 Amborella trichopoda HOM05D003295 ORTHO05D004003 2.9e-15 84.7 57 73.7
MCO12G394 Micromonas commoda HOM05D003295 ORTHO05D004003 3.8e-15 84.3 57 71.9
SEGI_32099 Sequoiadendron giganteum HOM05D003295 ORTHO05D004003 3.8e-15 84.3 57 73.7
DCAR_023806 Daucus carota HOM05D003295 ORTHO05D004003 8.4e-15 83.2 57 70.2
HPP92_009140 Vanilla planifolia HOM05D003295 ORTHO05D004003 1.1e-14 82.8 57 70.2
Cfa023084 Carpinus fangiana HOM05D003295 ORTHO05D124303 9.3e-14 79.7 57 68.4
AL6G26380 Arabidopsis lyrata HOM05D003295 ORTHO05D004003 1.2e-13 79.3 56 67.9
Carub.0006s1369 Capsella rubella HOM05D003295 ORTHO05D004003 3.5e-13 77.8 57 64.9
Haze_26314 Corylus avellana HOM05D003295 ORTHO05D004003 1.3e-12 75.9 57 64.9
Cre12.g523850 Chlamydomonas reinhardtii HOM05D003295 ORTHO05D004003 3.0e-12 74.7 57 61.4
Hma1.2p1_0796F.1_g219160 Hydrangea macrophylla HOM05D003295 ORTHO05D004003 1.5e-11 72.4 47 74.5
Os01g0711100 Oryza sativa ssp. japonica HOM05D003295 ORTHO05D004003 1.5e-11 72.4 56 67.9
CDE06G0384 Ceratophyllum demersum HOM05D003295 ORTHO05D004003 5.6e-11 70.5 58 58.6
HanXRQChr08g0211571 Helianthus annuus HOM05D003295 ORTHO05D004003 5.6e-11 70.5 57 56.1
Zm00001eb361310 Zea mays HOM05D003295 ORTHO05D004003 1.6e-10 68.9 58 63.8
HanXRQChr08g0211591 Helianthus annuus HOM05D003295 ORTHO05D004003 2.8e-10 68.2 57 50.9
GSVIVG01012193001 Vitis vinifera HOM05D003295 ORTHO05D004003 4.8e-10 67.4 56 58.9
Hma1.2p1_0051F.1_g029650 Hydrangea macrophylla HOM05D003295 ORTHO05D004003 1.8e-09 65.5 47 68.1
PRCOL_00000027 Prasinoderma coloniale HOM05D003295 ORTHO05D004003 2.4e-09 65.1 57 52.6
DCAR_005653 Daucus carota HOM05D003295 ORTHO05D004003 8.4e-07 56.6 56 57.1


User provided reference genes

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