Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 4.8e-272 940.6 502 100.0
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 7.4e-148 528.1 461 65.1
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.2e-142 510.8 446 62.3
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 8.2e-139 498.0 444 63.5
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 1.2e-137 494.2 462 61.3
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 2.2e-136 490.0 456 60.1
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 1.2e-134 484.2 445 61.3
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.4e-130 470.7 442 60.4
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.0e-129 466.8 492 56.1
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 8.8e-125 451.4 462 56.7
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 6.5e-120 435.3 439 56.5
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 4.0e-117 426.0 450 54.7
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 3.5e-113 412.9 446 54.5
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.1e-111 407.9 443 52.8
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.5e-111 407.5 439 53.1
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.2e-111 405.2 444 53.2
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 3.6e-110 402.9 416 55.3
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 3.6e-110 402.9 439 53.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.6e-110 402.9 439 54.2
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 6.1e-110 402.1 444 52.7
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 1.8e-109 400.6 435 56.3
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 8.9e-109 398.3 291 75.3
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.2e-108 397.9 444 52.5
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 4.4e-108 396.0 468 50.2
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 5.4e-106 389.0 443 52.4
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.2e-105 387.9 444 52.3
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 3.5e-105 386.3 382 57.6
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.5e-105 386.0 439 51.9
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.5e-105 386.0 432 53.9
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 5.6e-103 379.0 439 51.0
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.3e-103 378.6 441 51.9
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.6e-102 377.5 444 51.1
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 2.1e-102 377.1 491 47.5
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 3.6e-102 376.3 544 44.3
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 3.4e-100 369.8 439 50.3
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 4.4e-100 369.4 434 51.2
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 1.3e-99 367.9 456 48.2
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 1.6e-97 360.9 439 48.3
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.7e-97 360.1 439 47.2
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-96 358.2 460 50.0
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 8.6e-96 355.1 439 47.4
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 8.6e-96 355.1 379 53.6
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 4.3e-95 352.8 439 47.8
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.2e-94 351.3 443 46.0
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.8e-94 350.1 452 48.2
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 6.2e-94 349.0 395 51.6
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 3.1e-93 346.7 460 44.6
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 4.0e-93 346.3 432 47.5
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.5e-92 344.4 431 47.8
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.6e-92 343.6 439 46.7
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 4.4e-92 342.8 437 49.0
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 7.5e-92 342.0 431 47.8
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 9.8e-92 341.7 445 46.1
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 6.4e-91 339.0 438 46.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.9e-90 337.4 431 46.9
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 3.2e-90 336.7 445 44.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 5.4e-90 335.9 372 53.0
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.1e-89 334.0 439 48.1
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 3.5e-89 333.2 452 47.1
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.3e-88 330.5 438 46.8
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.9e-88 329.7 461 45.8
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.9e-88 329.7 461 45.8
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.5e-87 327.8 438 46.1
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.5e-87 327.8 461 46.0
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.5e-87 327.8 454 46.0
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 2.5e-87 327.0 439 43.7
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.3e-87 325.5 321 58.3
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 9.5e-87 325.1 439 46.7
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 2.1e-86 323.9 435 45.1
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 3.6e-86 323.2 439 44.6
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 6.2e-86 322.4 439 45.8
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 1.4e-85 321.2 439 43.5
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.8e-85 320.9 442 45.2
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.8e-85 320.9 444 43.9
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 4.0e-85 319.7 455 45.3
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 6.8e-85 318.9 440 45.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.5e-84 317.8 443 46.5
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 4.4e-84 316.2 440 44.8
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.9e-83 313.5 439 45.6
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 6.4e-83 312.4 595 38.2
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 5.4e-82 309.3 503 42.1
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-81 308.1 439 41.9
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.6e-81 307.8 462 42.6
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 4.6e-81 306.2 354 50.0
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.0e-80 303.5 439 41.7
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.9e-80 303.1 418 46.9
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.1e-80 302.8 466 40.8
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 8.6e-80 302.0 439 45.1
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 1.1e-79 301.6 443 42.7
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.1e-79 301.6 461 41.0
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.3e-79 300.1 448 43.8
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 5.6e-79 299.3 445 43.4
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 5.6e-79 299.3 443 42.4
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.1e-78 297.4 458 43.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.4e-77 294.7 447 44.1
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 8.9e-77 292.0 439 44.0
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 2.0e-76 290.8 483 42.4
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 8.4e-75 285.4 309 51.8
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 4.2e-74 283.1 470 41.5
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.3e-72 277.3 349 47.3
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 6.6e-72 275.8 452 42.5
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-71 275.0 222 74.3
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.5e-71 273.9 439 41.9
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 7.3e-71 272.3 434 41.2
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.2e-68 265.0 444 39.0
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.3e-67 261.5 418 42.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.7e-67 261.2 385 43.4
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 6.0e-65 252.7 254 53.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 1.3e-64 251.5 453 38.0
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 9.6e-63 245.4 444 35.8
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.8e-62 243.8 453 39.1
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 3.6e-62 243.4 408 40.4
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.6e-60 237.3 451 38.6
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 4.9e-59 233.0 353 44.5
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 7.1e-58 229.2 444 34.2
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.3e-56 224.2 438 34.5
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.7e-56 222.6 332 41.9
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 7.4e-55 219.2 162 75.9
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.1e-53 215.3 612 28.9
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 5.3e-53 213.0 221 56.1
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.2e-52 211.8 302 44.7
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 2.0e-52 211.1 447 33.3
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.8e-45 188.0 257 43.6
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 7.1e-42 176.0 221 47.1
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.1e-40 169.9 410 34.6
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 8.7e-40 169.1 211 45.5
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 6.5e-35 152.9 343 32.9
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 4.2e-34 150.2 179 53.6
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.6e-33 148.3 181 47.5
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 3.0e-32 144.1 446 28.0
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.7e-30 138.3 412 27.4
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.6e-28 131.0 426 28.9
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 8.5e-27 125.9 212 40.6
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.4e-26 125.2 74 89.2
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 4.4e-23 113.6 131 48.1
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.7e-22 111.7 393 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 8.2e-22 109.4 259 29.0
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 1.8e-21 108.2 115 57.4
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 5.3e-21 106.7 66 84.8
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 4.5e-20 103.6 173 40.5
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 5.0e-19 100.1 81 65.4
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 7.2e-18 96.3 150 44.7
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 7.2e-18 96.3 137 45.3
TPR.G40486 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-17 95.1 103 58.3
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea HOM05D004546 ORTHO05D005419 5.7e-15 86.7 103 48.5
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.7e-14 84.0 88 52.3
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-13 82.0 78 52.6
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 2.4e-13 81.3 103 41.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-07 62.4 97 37.1
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-07 62.4 425 24.2


User provided reference genes

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