Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.3e-174 615.5 326 100.0
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.4e-109 399.1 239 92.5
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 7.5e-101 371.3 239 86.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.2e-100 369.8 242 85.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 4.9e-100 368.6 224 92.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 6.4e-100 368.2 242 84.7
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 6.4e-100 368.2 240 87.1
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.1e-99 367.5 239 85.8
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-99 366.7 265 79.2
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-99 366.7 242 84.3
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 5.4e-99 365.2 242 84.3
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 7.0e-99 364.8 239 85.8
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.0e-98 363.2 241 83.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-98 362.5 241 83.0
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-98 362.5 241 83.0
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.5e-98 362.5 241 83.0
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.0e-97 360.9 241 82.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.0e-97 359.4 241 82.2
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 3.0e-97 359.4 239 84.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.9e-97 359.0 242 81.4
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 3.9e-97 359.0 241 81.7
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 6.6e-97 358.2 241 81.3
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-96 357.5 241 82.2
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.9e-96 356.7 241 81.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-96 356.7 241 81.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.9e-96 356.7 241 81.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.9e-96 356.7 241 80.5
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 4.3e-96 355.5 241 80.1
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 4.3e-96 355.5 241 80.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 5.6e-96 355.1 241 81.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.6e-96 355.1 241 80.9
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 7.3e-96 354.8 241 80.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 7.3e-96 354.8 241 81.3
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-95 354.0 241 80.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.2e-95 354.0 241 81.7
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.2e-95 354.0 241 78.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.6e-95 353.6 241 80.1
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.6e-95 353.6 241 80.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.6e-95 353.6 241 80.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.6e-95 353.6 241 80.5
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.8e-95 352.8 241 80.5
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.8e-95 352.8 241 80.5
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.8e-95 352.8 242 80.2
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.6e-95 352.4 241 80.1
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 3.6e-95 352.4 241 80.9
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 3.6e-95 352.4 241 78.8
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.6e-95 352.4 241 80.9
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.2e-95 351.7 241 80.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.2e-95 351.7 241 79.3
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.2e-95 351.7 241 80.5
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.2e-95 351.7 241 80.1
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 8.1e-95 351.3 241 79.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 8.1e-95 351.3 241 80.1
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 8.1e-95 351.3 241 79.3
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 8.1e-95 351.3 241 79.3
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.1e-94 350.9 241 79.3
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.4e-94 350.5 241 78.8
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.4e-94 350.5 242 79.8
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.8e-94 350.1 243 77.8
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.3e-94 349.7 241 80.9
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.1e-94 349.4 241 77.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.1e-94 349.4 241 79.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.1e-94 349.4 241 79.7
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.1e-94 349.4 241 79.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-94 349.0 241 78.4
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 4.0e-94 349.0 241 80.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 5.2e-94 348.6 240 79.6
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 8.9e-94 347.8 241 78.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 8.9e-94 347.8 242 80.2
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.9e-94 347.8 241 77.2
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.2e-93 347.4 241 78.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-93 347.4 241 79.3
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.6e-93 346.3 241 77.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.6e-93 346.3 241 78.8
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.6e-93 346.3 241 79.3
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.4e-93 345.9 241 79.7
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.4e-93 345.9 241 78.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 4.4e-93 345.5 241 80.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.8e-93 345.1 241 78.8
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 5.8e-93 345.1 241 77.6
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 9.9e-93 344.4 239 79.5
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.3e-92 344.0 242 76.9
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.3e-92 344.0 241 77.2
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.3e-92 344.0 241 77.2
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.7e-92 343.6 241 78.4
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.2e-92 343.2 243 78.6
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.7e-92 342.4 239 79.1
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.7e-92 342.4 241 79.3
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.7e-92 342.4 241 77.2
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 4.9e-92 342.0 241 79.3
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 8.3e-92 341.3 241 78.0
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 8.3e-92 341.3 241 76.8
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.1e-91 340.9 241 78.8
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.4e-91 340.5 241 76.3
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.4e-91 340.5 241 76.8
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.4e-91 340.5 242 76.9
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.9e-91 340.1 241 78.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.4e-91 339.7 238 77.3
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 4.1e-91 339.0 241 77.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 4.1e-91 339.0 247 75.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 4.1e-91 339.0 241 77.2
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.1e-91 338.2 241 76.8
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.2e-90 337.4 240 76.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.2e-90 337.4 225 81.8
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.6e-90 335.5 241 77.2
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 3.0e-89 332.8 240 77.1
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.1e-89 332.0 241 75.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 8.6e-89 331.3 218 82.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.3e-88 329.3 226 80.5
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 4.3e-88 328.9 226 80.5
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.1e-87 326.6 241 74.3
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.8e-87 326.2 241 74.3
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 8.1e-87 324.7 249 72.7
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.1e-86 324.3 241 73.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.1e-86 324.3 241 73.4
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.4e-86 323.9 241 73.9
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.8e-86 323.6 241 73.4
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 4.0e-86 322.4 241 73.9
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.0e-86 322.4 241 73.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 5.2e-86 322.0 241 73.0
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 6.8e-86 321.6 249 71.9
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.3e-84 317.4 210 81.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.9e-84 316.2 243 72.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 8.4e-84 314.7 227 73.1
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.6e-82 310.5 223 73.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.1e-81 305.4 224 70.5
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-80 303.9 214 79.4
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.3e-80 302.8 229 75.1
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.8e-79 299.7 233 70.0
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.7e-79 298.9 221 70.6
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.4e-77 292.7 218 70.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.1e-75 287.7 175 92.0
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.7e-74 283.1 241 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.1e-73 278.9 233 63.5
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 9.6e-72 274.6 221 63.3
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 8.4e-68 261.5 229 64.6
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.9e-67 260.4 246 61.0
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.7e-66 256.5 241 64.3
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 6.7e-65 251.9 208 64.4
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.5e-64 250.0 229 62.9
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.1e-63 246.9 239 58.6
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.5e-61 239.2 229 63.3
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.6e-58 229.2 211 59.7
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.9e-57 226.1 214 64.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.1e-50 203.8 232 57.8
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.5e-48 197.6 213 59.2
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 4.3e-48 196.1 194 53.6
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.4e-45 186.4 195 52.3
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.3e-44 184.5 130 76.9
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-42 177.9 105 89.5
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 3.9e-41 172.9 116 78.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.3e-36 157.9 179 54.7
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.8e-31 140.2 97 78.4
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.9e-28 130.2 171 49.7
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.4e-25 121.3 126 59.5
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.3e-25 120.6 69 91.3
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 8.0e-18 95.5 75 66.7
TPR.G22447 Trifolium pratense HOM05D005210 ORTHO05D010080 3.7e-07 60.1 78 43.6
Phvul.005G088636 Phaseolus vulgaris HOM05D005210 ORTHO05D010080 4.8e-07 59.7 65 49.2
TPR.G32363 Trifolium pratense HOM05D005210 ORTHO05D010080 8.3e-07 58.9 78 42.3
Lj6g0026306 Lotus japonicus HOM05D005210 ORTHO05D010080 1.1e-06 58.5 78 42.3
Medtr6g012880 Medicago truncatula HOM05D005210 ORTHO05D010080 1.1e-06 58.5 63 44.4
Lalb_Chr17g0337341 Lupinus albus HOM05D005210 ORTHO05D010080 9.1e-06 55.5 63 47.6


User provided reference genes

Program Settings