Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 4.7e-36 154.1 81 100.0
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 2.4e-32 141.7 100 78.0
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 6.8e-19 97.1 100 60.0
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 8.3e-17 90.1 49 87.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.4e-16 89.4 104 56.7
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.0e-14 83.2 48 83.3
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.5e-13 79.3 49 77.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.9e-13 79.0 58 67.2
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 5.6e-13 77.4 49 77.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 5.6e-13 77.4 49 77.6
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 7.3e-13 77.0 46 80.4
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 7.3e-13 77.0 46 80.4
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 7.3e-13 77.0 103 48.5
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 7.3e-13 77.0 46 80.4
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 9.5e-13 76.6 41 85.4
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.2e-12 76.3 69 60.9
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.1e-12 75.5 83 55.4
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.1e-12 75.5 81 54.3
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.1e-12 75.5 102 49.0
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.1e-12 75.5 77 59.7
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.8e-12 75.1 66 59.1
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.8e-12 75.1 40 90.0
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 4.7e-12 74.3 52 71.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 4.7e-12 74.3 52 71.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 4.7e-12 74.3 52 71.2
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 4.7e-12 74.3 52 71.2
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.7e-12 74.3 81 51.9
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 4.7e-12 74.3 49 75.5
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 4.7e-12 74.3 69 59.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 4.7e-12 74.3 72 58.3
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 4.7e-12 74.3 43 83.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 6.2e-12 73.9 43 76.7
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.2e-12 73.9 79 51.9
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 6.2e-12 73.9 65 58.5
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 6.2e-12 73.9 65 58.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.1e-11 73.2 81 54.3
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.1e-11 73.2 107 44.9
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.1e-11 73.2 77 51.9
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.4e-11 72.8 57 66.7
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.4e-11 72.8 69 55.1
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.8e-11 72.4 110 43.6
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.8e-11 72.4 40 82.5
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.1e-11 71.6 79 51.9
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 3.1e-11 71.6 103 44.7
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 4.0e-11 71.2 69 55.1
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 5.2e-11 70.9 79 49.4
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 5.2e-11 70.9 49 67.3
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 5.2e-11 70.9 49 75.5
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 5.2e-11 70.9 40 80.0
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 5.2e-11 70.9 40 80.0
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 5.2e-11 70.9 81 53.1
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 5.2e-11 70.9 42 78.6
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 6.8e-11 70.5 41 78.0
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 8.9e-11 70.1 83 50.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 8.9e-11 70.1 54 66.7
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.2e-10 69.7 81 50.6
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.2e-10 69.7 69 58.0
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.2e-10 69.7 49 73.5
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.2e-10 69.7 39 79.5
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.2e-10 69.7 63 55.6
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.2e-10 69.7 72 58.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.2e-10 69.7 40 80.0
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.5e-10 69.3 40 80.0
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.5e-10 69.3 105 46.7
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 2.0e-10 68.9 81 53.1
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.0e-10 68.9 60 60.0
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 2.0e-10 68.9 40 77.5
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.0e-10 68.9 40 77.5
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.0e-10 68.9 42 76.2
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.0e-10 68.9 42 76.2
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.6e-10 68.6 40 80.0
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.4e-10 68.2 40 82.5
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 3.4e-10 68.2 49 69.4
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 3.4e-10 68.2 54 68.5
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 5.8e-10 67.4 66 59.1
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 5.8e-10 67.4 48 66.7
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 7.5e-10 67.0 48 68.8
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 7.5e-10 67.0 42 73.8
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 9.9e-10 66.6 46 71.7
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 9.9e-10 66.6 57 64.9
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.3e-09 66.2 80 48.8
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.3e-09 66.2 42 73.8
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.7e-09 65.9 40 77.5
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 2.2e-09 65.5 74 52.7
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.2e-09 65.5 79 50.6
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 2.9e-09 65.1 38 84.2
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.9e-09 65.1 57 63.2
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 4.9e-09 64.3 87 48.3
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.4e-08 62.8 42 73.8
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.4e-08 62.8 40 67.5
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.9e-08 62.4 79 48.1
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 4.1e-08 61.2 58 56.9
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 7.1e-08 60.5 40 70.0
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 7.1e-08 60.5 40 70.0
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.6e-07 59.3 40 62.5
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.6e-07 59.3 40 62.5
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 2.7e-07 58.5 46 56.5
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 3.5e-07 58.2 38 68.4
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 4.6e-07 57.8 38 68.4
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 2.3e-06 55.5 37 64.9


User provided reference genes

Program Settings