Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 2.2e-96 355.5 165 100.0
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 9.7e-89 330.1 165 91.5
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 5.3e-87 324.3 165 90.3
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 1.3e-85 319.7 165 87.3
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 9.4e-84 313.5 163 86.5
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 3.0e-82 308.5 165 82.4
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 5.2e-82 307.8 168 83.3
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 1.5e-81 306.2 158 88.6
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 4.8e-80 301.2 163 82.2
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 1.0e-77 293.5 163 79.8
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 1.0e-77 293.5 165 81.2
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 1.3e-77 293.1 166 81.3
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 1.7e-77 292.7 163 79.8
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 2.9e-77 292.0 165 78.8
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 2.9e-77 292.0 165 78.2
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 3.8e-77 291.6 166 81.3
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 5.0e-77 291.2 162 80.9
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 8.5e-77 290.4 165 78.2
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 1.9e-76 289.3 165 77.6
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 1.9e-76 289.3 163 77.3
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 3.2e-76 288.5 165 77.6
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 5.5e-76 287.7 165 76.4
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 5.5e-76 287.7 165 76.4
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 7.2e-76 287.3 165 78.2
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 77.0
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 76.4
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 75.8
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 75.8
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 6.1e-75 284.3 165 78.2
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 8.0e-75 283.9 162 79.6
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.0e-74 283.5 166 77.1
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 76.4
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 77.6
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 77.6
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 3.0e-74 282.0 165 75.8
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 73.9
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 5.2e-74 281.2 165 77.0
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 5.2e-74 281.2 165 77.0
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 5.2e-74 281.2 161 77.6
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 77.0
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 77.0
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 6.8e-74 280.8 163 77.3
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 73.9
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 78.2
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 1.2e-73 280.0 161 75.8
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.6
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 76.4
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.6
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.0
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.5e-73 279.6 164 73.2
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 74.5
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 2.0e-73 279.3 165 76.4
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 2.0e-73 279.3 165 77.6
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 73.3
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 72.7
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 74.5
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 75.8
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 77.0
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 72.7
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 1.3e-72 276.6 161 75.2
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 73.9
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 2.8e-72 275.4 162 76.5
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 3.7e-72 275.0 162 75.3
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 4.9e-72 274.6 163 77.9
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 1.4e-71 273.1 165 74.5
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 2.4e-71 272.3 165 77.6
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 3.1e-71 271.9 162 74.7
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 4.1e-71 271.6 163 76.1
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 4.1e-71 271.6 165 78.2
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 5.4e-71 271.2 163 73.0
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 7.0e-71 270.8 165 75.2
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.2e-70 270.0 164 75.6
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 2.7e-70 268.9 162 73.5
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 7.7e-70 267.3 165 73.9
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 1.2e-67 260.0 162 72.2
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 3.0e-66 255.4 165 68.5
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.5e-65 253.1 144 77.1
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 8.3e-64 247.3 162 66.0
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 2.0e-62 242.7 165 71.5
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 2.7e-62 242.3 199 57.8
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 9.5e-60 233.8 161 66.5
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 2.1e-59 232.6 164 67.1
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 4.7e-59 231.5 258 48.1
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 7.0e-55 217.6 141 70.2
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 2.0e-54 216.1 126 78.6
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 7.8e-54 214.2 156 60.9
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 1.6e-51 206.5 116 78.4
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 1.4e-50 203.4 159 57.9
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 6.8e-50 201.1 108 84.3
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 2.6e-49 199.1 155 59.4
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 7.1e-47 191.0 159 57.2
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 1.2e-46 190.3 159 57.9
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 4.6e-38 161.8 86 86.0
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 1.6e-35 153.3 91 74.7
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 3.6e-35 152.1 82 81.7
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 8.1e-35 151.0 83 77.1
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 5.8e-33 144.8 82 78.0
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.3e-32 143.7 91 67.0
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 1.9e-31 139.8 80 76.2
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 7.1e-31 137.9 82 69.5
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 2.7e-30 136.0 84 72.6
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 4.6e-30 135.2 82 70.7
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 1.1e-28 130.6 82 68.3
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.0e-25 119.8 94 59.6
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.3e-16 90.5 69 63.8
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 7.4e-12 74.7 43 76.7
PRCOL_00005528 Prasinoderma coloniale HOM05D007259 ORTHO05D009158 7.6e-09 64.7 56 53.6


User provided reference genes

Program Settings