Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.3e-55 219.9 148 100.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.1e-51 206.8 148 79.1
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.2e-48 196.8 148 74.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.7e-47 193.0 148 72.3
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 4.8e-47 191.4 148 71.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.1e-46 190.3 143 84.6
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 71.6
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 70.3
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-44 183.0 148 68.9
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.8e-44 181.8 148 67.6
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.5e-43 179.9 148 68.2
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.5e-43 179.1 148 68.2
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.5e-43 179.1 148 66.9
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.5e-43 177.2 148 66.2
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 9.5e-43 177.2 148 66.2
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 6.1e-42 174.5 148 64.2
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 6.8e-41 171.0 148 63.5
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.5e-40 169.9 148 64.2
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.5e-40 169.9 148 63.5
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 2.6e-40 169.1 148 63.5
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 3.4e-40 168.7 148 62.8
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 3.4e-40 168.7 148 64.2
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.9e-39 164.9 148 62.2
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 4.9e-39 164.9 148 60.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.8e-38 162.9 148 60.8
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.4e-38 162.5 144 63.2
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.4e-38 162.5 147 60.5
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.1e-38 162.2 144 63.2
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.1e-38 162.2 148 60.1
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.0e-38 161.0 143 64.3
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 7.0e-38 161.0 148 60.8
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 7.0e-38 161.0 148 60.8
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 2.0e-37 159.5 148 67.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.0e-37 159.5 143 62.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.0e-37 159.5 148 60.1
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.5e-37 158.7 143 62.2
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.9e-37 157.9 148 61.5
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 5.9e-37 157.9 148 58.8
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.0e-36 157.1 148 59.5
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.0e-36 157.1 148 59.5
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.3e-36 156.8 148 63.5
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.1e-35 153.7 119 73.9
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 3.3e-35 152.1 148 60.1
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 4.3e-35 151.8 145 57.9
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 5.6e-35 151.4 150 61.3
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.8e-34 149.1 148 55.4
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 58.8
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 70.3
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 6.1e-34 147.9 150 58.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.8e-33 146.4 150 58.7
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.3e-33 146.0 150 58.7
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.0e-32 142.9 150 57.3
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.6e-32 142.5 120 69.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.6e-32 142.5 150 54.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-32 142.1 119 68.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 5.8e-32 141.4 152 53.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.5e-32 141.0 119 68.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 7.5e-32 141.0 119 68.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 9.8e-32 140.6 150 55.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.3e-31 140.2 152 57.9
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.7e-31 139.8 144 56.2
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.9e-31 139.0 150 66.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.9e-31 139.0 150 66.0
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.9e-31 139.0 152 59.9
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 4.9e-31 138.3 148 52.7
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 4.9e-31 138.3 150 54.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.9e-30 136.3 151 55.0
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.4e-30 136.0 148 50.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.4e-30 136.0 148 53.4
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 5.4e-30 134.8 150 52.7
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 5.4e-30 134.8 151 55.0
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 7.0e-30 134.4 141 55.3
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-29 133.7 138 58.0
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-29 133.3 121 62.8
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.6e-29 133.3 151 54.3
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.0e-29 132.9 148 62.8
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.7e-29 132.5 151 66.2
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 2.7e-29 132.5 132 57.6
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.5e-29 132.1 140 51.4
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.6e-29 131.7 114 67.5
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.6e-29 131.7 114 67.5
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 7.8e-29 131.0 148 56.8
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.7e-28 129.8 148 50.7
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 3.0e-28 129.0 148 50.0
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.9e-28 128.6 148 62.8
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.9e-28 128.6 149 53.0
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.9e-28 128.6 149 53.0
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 5.0e-28 128.3 148 49.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 5.0e-28 128.3 148 49.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 5.0e-28 128.3 148 49.3
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 6.6e-28 127.9 142 54.2
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 6.6e-28 127.9 148 49.3
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 6.6e-28 127.9 148 49.3
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 6.6e-28 127.9 155 53.5
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 8.6e-28 127.5 148 49.3
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.1e-27 127.1 148 50.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.9e-27 126.3 148 48.6
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.9e-27 126.3 148 48.6
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.5e-27 125.9 142 50.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.5e-27 125.9 148 48.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.3e-27 125.2 149 51.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.6e-26 123.2 121 59.5
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.8e-25 119.8 151 48.3
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.3e-25 119.4 149 48.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.0e-25 118.6 129 54.3
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 8.9e-25 117.5 149 51.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.2e-24 117.1 149 53.7
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.6e-24 115.9 114 58.8
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.7e-23 112.1 118 54.2
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.9e-22 109.8 141 44.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 2.3e-20 102.8 112 50.9
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.3e-20 102.8 149 49.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 8.6e-20 100.9 125 53.6
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 8.6e-20 100.9 111 55.0
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 9.5e-19 97.4 119 47.9
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.4e-17 93.6 148 38.5
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.2e-16 90.5 119 62.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-15 86.3 62 75.8
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.9e-15 85.1 64 67.2
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 6.0e-13 78.2 61 62.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 3.0e-12 75.9 57 71.9
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.3e-11 72.4 60 66.7
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-10 70.1 60 65.0
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 4.0e-09 65.5 54 66.7
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.9e-06 56.6 137 32.8
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 7.1e-06 54.7 65 53.8


User provided reference genes

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