Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 5.2e-154 548.1 377 100.0
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 1.7e-133 479.9 378 90.7
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 2.6e-121 439.5 383 74.7
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 6.2e-107 391.7 381 63.5
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 6.2e-107 391.7 381 63.5
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 1.6e-102 377.1 382 75.9
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 7.4e-100 368.2 389 67.6
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 1.7e-96 357.1 389 66.3
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 1.4e-95 354.0 389 66.8
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 2.8e-91 339.7 389 71.7
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 8.2e-91 338.2 397 62.5
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.1e-90 337.8 377 58.9
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 1.0e-88 331.3 386 67.9
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 1.2e-86 324.3 393 65.6
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 3.6e-86 322.8 393 66.7
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.8e-77 293.9 390 60.3
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.3e-77 293.5 390 57.2
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 2.6e-76 290.0 392 56.4
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 4.8e-75 285.8 389 62.5
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 4.8e-75 285.8 382 50.0
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 6.3e-75 285.4 382 63.6
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 1.8e-74 283.9 392 55.6
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 2.6e-73 280.0 394 49.0
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 3.4e-73 279.6 372 60.8
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 2.2e-72 276.9 392 61.5
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 4.2e-71 272.7 386 46.9
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 1.6e-70 270.8 383 59.0
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 2.1e-70 270.4 383 47.5
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 2.1e-70 270.4 379 63.6
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 2.7e-70 270.0 386 46.1
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 6.1e-70 268.9 391 46.8
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 6.1e-70 268.9 380 63.7
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 7.9e-70 268.5 386 45.9
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 1.8e-69 267.3 394 46.7
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 1.8e-69 267.3 386 46.9
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 1.1e-68 264.6 389 57.3
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 1.1e-68 264.6 391 60.1
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.0e-68 263.8 383 59.3
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 2.0e-68 263.8 377 63.1
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 4.4e-68 262.7 383 45.4
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 5.7e-68 262.3 391 58.6
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 9.7e-68 261.5 392 59.2
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.7e-67 260.8 388 57.7
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.8e-67 260.0 388 55.4
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 4.8e-67 259.2 387 59.2
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 8.2e-67 258.5 391 48.6
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 1.2e-65 254.6 387 45.5
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.6e-65 254.2 390 59.5
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 1.6e-65 254.2 391 46.3
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 2.6e-65 253.4 391 45.3
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 7.7e-65 251.9 390 62.1
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 8.5e-64 248.4 390 51.0
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 4.2e-63 246.1 391 58.3
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 5.5e-63 245.7 380 54.2
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 9.4e-63 245.0 392 47.2
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 1.2e-62 244.6 383 58.5
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.7e-62 243.4 379 58.0
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 3.6e-62 243.0 369 46.6
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 8.8e-61 238.4 384 61.5
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 8.8e-61 238.4 380 57.1
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 1.5e-60 237.7 379 45.1
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 5.7e-60 235.7 392 58.7
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 7.5e-60 235.3 357 46.2
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 1.3e-59 234.6 423 44.4
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-58 231.5 379 44.3
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 1.8e-58 230.7 386 53.4
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 3.1e-58 229.9 447 44.7
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 7.7e-57 225.3 391 43.7
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 2.9e-56 223.4 391 53.2
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 5.5e-55 219.2 390 43.8
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 4.7e-54 216.1 396 43.4
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 8.0e-54 215.3 395 42.8
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 5.2e-53 212.6 402 44.3
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 5.2e-53 212.6 354 53.7
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 8.8e-53 211.8 439 45.3
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.2e-52 211.5 393 57.0
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 2.6e-52 210.3 395 42.3
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 5.7e-52 209.1 376 52.1
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 3.7e-51 206.5 387 41.3
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 6.3e-51 205.7 378 54.2
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 4.1e-50 203.0 395 53.7
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 7.0e-50 202.2 378 41.0
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 9.1e-50 201.8 383 47.3
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.0e-49 200.7 340 43.8
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 3.5e-49 199.9 375 39.7
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 5.9e-49 199.1 382 41.6
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 1.0e-48 198.4 375 48.5
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 1.3e-48 198.0 382 39.5
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 3.8e-48 196.4 388 54.6
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 5.0e-48 196.1 384 42.2
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 5.5e-47 192.6 374 52.7
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 5.5e-47 192.6 378 57.1
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 2.1e-46 190.7 390 38.5
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 4.7e-46 189.5 374 57.0
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 2.0e-44 184.1 377 54.6
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 3.4e-44 183.3 381 47.2
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 7.5e-44 182.2 378 54.8
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 9.8e-44 181.8 402 42.8
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 1.3e-43 181.4 404 39.4
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 2.8e-43 180.3 396 42.4
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.8e-42 177.6 381 52.5
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 9.2e-42 175.3 96 91.7
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 9.2e-42 175.3 381 51.2
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.2e-41 174.9 381 44.4
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.0e-41 174.1 381 47.0
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 2.0e-41 174.1 427 35.4
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 3.5e-41 173.3 385 46.2
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 7.8e-41 172.2 380 45.8
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 2.3e-40 170.6 379 39.8
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 8.6e-40 168.7 392 50.8
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 1.9e-39 167.5 381 45.7
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 1.9e-39 167.5 383 53.8
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 7.3e-39 165.6 378 43.1
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 7.3e-39 165.6 377 39.5
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 9.5e-39 165.2 377 42.7
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 1.6e-38 164.5 377 42.7
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 1.0e-37 161.8 314 39.8
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.3e-37 160.6 380 52.4
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 2.3e-37 160.6 385 54.5
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 4.0e-37 159.8 387 51.2
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 1.2e-36 158.3 381 43.6
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 1.5e-36 157.9 387 47.0
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 2.6e-36 157.1 378 47.1
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 2.6e-36 157.1 379 44.1
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 5.7e-36 156.0 386 45.6
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 9.8e-36 155.2 375 46.4
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 2.9e-35 153.7 377 46.4
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 4.9e-35 152.9 381 44.4
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 6.4e-35 152.5 385 52.5
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 6.4e-35 152.5 381 53.3
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 2.4e-34 150.6 379 45.1
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 3.2e-34 150.2 378 43.9
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 5.4e-34 149.4 377 44.3
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 1.2e-33 148.3 378 44.2
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 2.7e-33 147.1 378 43.1
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 5.0e-32 142.9 376 37.0
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 8.6e-32 142.1 374 44.7
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 6.8e-29 132.5 379 49.6
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 1.7e-27 127.9 377 40.8
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 2.9e-27 127.1 384 35.2
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 4.9e-27 126.3 95 70.5
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 1.9e-26 124.4 333 43.2
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 4.6e-25 119.8 212 54.7
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 2.3e-24 117.5 384 49.5
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 3.0e-24 117.1 378 32.0
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 5.0e-24 116.3 384 46.9
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 7.3e-23 112.5 377 35.3
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 2.1e-22 110.9 380 46.6
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 6.2e-22 109.4 397 30.5
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 1.1e-21 108.6 377 46.4
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.0e-20 104.4 386 32.9
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.6e-20 104.0 320 48.1
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 5.1e-16 89.7 433 36.7
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 6.2e-14 82.8 381 47.5
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 6.2e-14 82.8 381 47.5
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 4.0e-13 80.1 95 53.7
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 7.6e-12 75.9 453 33.6
Nn5g28268 Nelumbo nucifera HOM05D000555 ORTHO05D001906 4.1e-10 70.1 59 62.7
SGA_v2.0_scaffold2G00916 Striga asiatica HOM05D000666 ORTHO05D001727 1.7e-08 64.7 101 42.6
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 8.6e-08 62.4 98 50.0
Nn3g16362 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.1e-07 62.0 57 57.9
Oeu009879.2 Olea europaea HOM05D004052 ORTHO05D004694 1.1e-07 62.0 249 28.9
SEGI_00111 Sequoiadendron giganteum HOM05D000666 ORTHO05D001727 1.9e-07 61.2 97 43.3
Os01g0757600 Oryza sativa ssp. japonica HOM05D004052 ORTHO05D004694 2.5e-07 60.8 230 33.0
ATR1159G041 Amborella trichopoda HOM05D000666 ORTHO05D001727 1.2e-06 58.5 95 44.2
MBI14_g17614_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001727 1.2e-06 58.5 95 47.4
CDE09G1432 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.1e-06 57.8 90 42.2
CDE09G0017 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.8e-06 57.4 67 55.2


User provided reference genes

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