Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.1e-92 344.0 266 100.0
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.5e-25 120.2 94 69.1
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.4e-17 94.4 84 54.8
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.4e-17 94.4 74 59.5
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.5e-17 93.6 116 48.3
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.5e-17 93.6 81 54.3
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 3.2e-17 93.2 74 60.8
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 9.4e-17 91.7 89 59.6
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.1e-16 90.5 76 55.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.1e-16 90.5 76 55.3
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.1e-16 90.5 76 55.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 2.1e-16 90.5 69 65.2
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 2.7e-16 90.1 89 56.2
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.1e-16 89.0 55 70.9
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 8.0e-16 88.6 78 60.3
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.0e-15 88.2 71 57.7
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.4e-15 87.8 61 67.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.4e-15 87.8 56 69.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.4e-15 87.8 59 64.4
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.4e-15 87.8 72 59.7
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.4e-15 87.8 68 58.8
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.8e-15 87.4 94 47.9
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.8e-15 87.4 79 55.7
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.8e-15 87.4 81 55.6
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.8e-15 87.4 64 62.5
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.8e-15 87.4 60 66.7
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.3e-15 87.0 81 51.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.3e-15 87.0 72 59.7
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.3e-15 87.0 72 59.7
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.3e-15 87.0 80 51.2
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 2.3e-15 87.0 54 64.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.9e-15 86.3 84 51.2
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 5.2e-15 85.9 102 46.1
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 5.2e-15 85.9 75 53.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 5.2e-15 85.9 78 52.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.2e-15 85.9 98 50.0
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.2e-15 85.9 98 50.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 6.7e-15 85.5 70 60.0
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 6.7e-15 85.5 60 65.0
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 6.7e-15 85.5 63 61.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 6.7e-15 85.5 92 53.3
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 8.8e-15 85.1 98 49.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 8.8e-15 85.1 80 56.2
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 8.8e-15 85.1 82 53.7
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.5e-14 84.3 80 53.8
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.5e-14 84.3 80 53.8
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.5e-14 84.3 100 47.0
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.5e-14 84.3 104 42.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-14 84.3 55 69.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-14 84.3 55 69.1
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.5e-14 84.3 55 69.1
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 2.6e-14 83.6 79 53.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.6e-14 83.6 56 66.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 3.3e-14 83.2 75 52.0
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.3e-14 83.2 75 52.0
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.3e-14 83.2 75 52.0
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 3.3e-14 83.2 75 52.0
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.4e-14 82.8 98 50.0
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 5.7e-14 82.4 78 52.6
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.7e-14 82.4 69 58.0
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 5.7e-14 82.4 82 48.8
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 5.7e-14 82.4 45 75.6
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 5.7e-14 82.4 45 75.6
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 5.7e-14 82.4 76 53.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 7.4e-14 82.0 94 46.8
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.4e-14 82.0 64 59.4
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 7.4e-14 82.0 65 61.5
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 9.7e-14 81.6 69 59.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 9.7e-14 81.6 96 45.8
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.3e-13 81.3 82 53.7
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.3e-13 81.3 75 53.3
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.7e-13 80.9 98 48.0
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.7e-13 80.9 70 57.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.7e-13 80.9 70 57.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.7e-13 80.9 95 49.5
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.2e-13 80.5 72 58.3
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.8e-13 80.1 59 61.0
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.8e-13 80.1 98 46.9
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.8e-13 80.1 63 58.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.8e-13 80.1 73 52.1
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-13 80.1 63 57.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-13 80.1 63 57.1
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 3.7e-13 79.7 101 44.6
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.7e-13 79.7 75 57.3
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.7e-13 79.7 63 52.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 6.3e-13 79.0 71 56.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 6.3e-13 79.0 75 53.3
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 8.2e-13 78.6 75 52.0
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.1e-12 78.2 80 55.0
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.1e-12 78.2 82 48.8
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 78.2 72 52.8
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 78.2 72 52.8
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 78.2 72 52.8
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 78.2 72 52.8
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 78.2 72 52.8
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.1e-12 78.2 63 50.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-12 77.8 72 54.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.8e-12 77.4 55 61.8
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 2.4e-12 77.0 102 42.2
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.4e-12 77.0 63 55.6
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.4e-12 77.0 63 55.6
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.4e-12 77.0 79 50.6
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 3.1e-12 76.6 60 60.0
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 3.1e-12 76.6 60 60.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.1e-12 76.6 55 61.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 4.1e-12 76.3 63 58.7
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.1e-12 76.3 85 48.2
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 5.3e-12 75.9 47 66.0
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 9.1e-12 75.1 85 48.2
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 9.1e-12 75.1 85 48.2
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-11 74.7 55 60.0
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.6e-11 74.3 70 51.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.6e-11 74.3 103 41.7
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.6e-11 73.6 62 56.5
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 3.5e-11 73.2 82 47.6
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 5.9e-11 72.4 77 51.9
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 7.7e-11 72.0 77 46.8
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 2.9e-10 70.1 82 45.1
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 6.5e-10 68.9 56 51.8
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 6.5e-10 68.9 63 49.2
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.5e-10 68.6 58 51.7
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.6e-08 64.3 57 54.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 8.8e-07 58.5 93 38.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.5e-06 57.8 65 47.7
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 2.0e-06 57.4 85 42.4
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 3.3e-06 56.6 44 56.8


User provided reference genes

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