Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22977 Trifolium pratense HOM05D000143 ORTHO05D000072 1.0e-35 152.9 78 100.0
Medtr3g080990 Medicago truncatula HOM05D000143 ORTHO05D000072 1.9e-18 95.5 74 77.0
Glyma.13G002700 Glycine max HOM05D000143 ORTHO05D000072 8.3e-14 80.1 68 67.6
Ca_16303_v3 Cicer arietinum L. HOM05D000143 ORTHO05D000072 1.8e-13 79.0 68 67.6
Ca_30002_v3 Cicer arietinum L. HOM05D000143 ORTHO05D000072 1.8e-13 79.0 68 67.6
Glyma.20G066500 Glycine max HOM05D000143 ORTHO05D000072 7.0e-13 77.0 68 69.1
Lj6g0023802 Lotus japonicus HOM05D000143 ORTHO05D000072 1.6e-12 75.9 68 64.7
Haze_09113 Corylus avellana HOM05D000143 ORTHO05D000072 1.1e-10 69.7 47 68.1
Phvul.006G000600 Phaseolus vulgaris HOM05D000143 ORTHO05D000072 1.1e-10 69.7 70 64.3
Gorai.003G074400 Gossypium raimondii HOM05D000143 ORTHO05D000072 1.5e-10 69.3 68 54.4
PGR031G0200 Punica granatum HOM05D000143 ORTHO05D000072 1.5e-10 69.3 47 74.5
Gohir.A02G095800 Gossypium hirsutum HOM05D000143 ORTHO05D000072 1.9e-10 68.9 68 54.4
Medtr8g099730 Medicago truncatula HOM05D000143 ORTHO05D000072 1.9e-10 68.9 45 75.6
Duzib205G1631 Durio zibethinus HOM05D000143 ORTHO05D000072 2.5e-10 68.6 47 70.2
Gohir.D03G087600 Gossypium hirsutum HOM05D000143 ORTHO05D000072 2.5e-10 68.6 68 54.4
PGR031G3398 Punica granatum HOM05D000143 ORTHO05D000072 3.3e-10 68.2 47 70.2
COL.COLO4_10749 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.3e-10 67.8 50 66.0
TPR.G3452 Trifolium pratense HOM05D000143 ORTHO05D000072 4.3e-10 67.8 45 71.1
Gohir.A12G238400 Gossypium hirsutum HOM05D000143 ORTHO05D000072 5.6e-10 67.4 47 66.0
Gohir.D12G239500 Gossypium hirsutum HOM05D000143 ORTHO05D000072 5.6e-10 67.4 47 66.0
Gorai.008G256600 Gossypium raimondii HOM05D000143 ORTHO05D000072 5.6e-10 67.4 47 66.0
EL10Ac5g12959 Beta vulgaris HOM05D000143 ORTHO05D000072 7.3e-10 67.0 57 61.4
Ca_17459_v3 Cicer arietinum L. HOM05D000143 ORTHO05D000072 7.3e-10 67.0 45 71.1
Glyma.08G025100 Glycine max HOM05D000143 ORTHO05D000072 1.2e-09 66.2 45 73.3
Lj4g0022434 Lotus japonicus HOM05D000143 ORTHO05D000072 1.6e-09 65.9 60 53.3
Thecc.03G302700 Theobroma cacao HOM05D000143 ORTHO05D000072 1.6e-09 65.9 46 65.2
Sc22g0004820 Simmondsia chinensis HOM05D000143 ORTHO05D000072 2.1e-09 65.5 45 75.6
Sabra03G0103700 Salix brachista HOM05D000143 ORTHO05D000072 2.8e-09 65.1 52 63.5
Gohir.D08G124800 Gossypium hirsutum HOM05D000143 ORTHO05D000072 3.6e-09 64.7 51 62.7
Gorai.004G131600 Gossypium raimondii HOM05D000143 ORTHO05D000072 4.7e-09 64.3 51 62.7
PSO063G4200 Papaver somniferum HOM05D000143 ORTHO05D000072 4.7e-09 64.3 46 69.6
PSO170G2228 Papaver somniferum HOM05D000143 ORTHO05D000072 4.7e-09 64.3 46 69.6
VMungo0251G2367 Vigna mungo HOM05D000143 ORTHO05D000072 4.7e-09 64.3 60 58.3
VMungo0540G0660 Vigna mungo HOM05D000143 ORTHO05D000072 4.7e-09 64.3 70 61.4
Gohir.A08G111700 Gossypium hirsutum HOM05D000143 ORTHO05D000072 6.2e-09 63.9 51 60.8
Ah.12g052900 Amaranthus hybridus HOM05D000143 ORTHO05D000072 8.0e-09 63.5 42 73.8
Ah.07g197720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 1.0e-08 63.2 43 72.1
Haze_09111 Corylus avellana HOM05D000143 ORTHO05D000072 1.0e-08 63.2 46 65.2
Potri.003G143100 Populus trichocarpa HOM05D000143 ORTHO05D000072 1.0e-08 63.2 51 64.7
Lalb_Chr09g0332181 Lupinus albus HOM05D000143 ORTHO05D000072 1.4e-08 62.8 45 71.1
Cpa.g.c35275 Carica papaya HOM05D000143 ORTHO05D000072 2.3e-08 62.0 50 60.0
Cpa.g.c36958 Carica papaya HOM05D000143 ORTHO05D000072 2.3e-08 62.0 50 60.0
MBI06_g33740_MAGBIO Magnolia biondii HOM05D000143 ORTHO05D000072 2.3e-08 62.0 50 62.0
Phvul.002G300900 Phaseolus vulgaris HOM05D000143 ORTHO05D000072 4.0e-08 61.2 60 58.3
QL02p029591 Quercus lobata HOM05D000143 ORTHO05D000072 5.2e-08 60.8 68 51.5
GSVIVG01019601001 Vitis vinifera HOM05D000143 ORTHO05D000072 5.2e-08 60.8 45 60.0
FvH4_5g11560 Fragaria vesca HOM05D000143 ORTHO05D000072 8.9e-08 60.1 45 64.4
FAN04G2796 Fragaria x ananassa HOM05D000143 ORTHO05D000072 8.9e-08 60.1 45 64.4
FAN13G3064 Fragaria x ananassa HOM05D000143 ORTHO05D000072 8.9e-08 60.1 45 64.4
FAN18G3636 Fragaria x ananassa HOM05D000143 ORTHO05D000072 8.9e-08 60.1 45 64.4
Lj8A204T61 Lonicera japonica HOM05D000143 ORTHO05D000072 1.2e-07 59.7 44 65.9
Manes.01G053100 Manihot esculenta HOM05D000143 ORTHO05D000072 1.2e-07 59.7 68 51.5
Nn3g18944 Nelumbo nucifera HOM05D000143 ORTHO05D000072 1.2e-07 59.7 47 59.6
Aqoxy5G04310 Aquilegia oxysepala HOM05D000143 ORTHO05D000072 1.5e-07 59.3 64 54.7
CDE02G0933 Ceratophyllum demersum HOM05D000143 ORTHO05D000072 1.5e-07 59.3 45 68.9
Duzib084G1064 Durio zibethinus HOM05D000143 ORTHO05D000072 1.5e-07 59.3 46 60.9
CiPaw.11G116500 Carya illinoinensis HOM05D000143 ORTHO05D000072 2.0e-07 58.9 46 58.7
ClCG01G001800 Citrullus lanatus HOM05D000143 ORTHO05D000072 2.0e-07 58.9 72 45.8
FAN08G1237 Fragaria x ananassa HOM05D000143 ORTHO05D000072 2.0e-07 58.9 45 62.2
RcHm_v2.0_Chr7g0186191 Rosa chinensis HOM05D000143 ORTHO05D000072 2.0e-07 58.9 45 62.2
Haze_09109 Corylus avellana HOM05D000143 ORTHO05D000072 2.6e-07 58.5 47 57.4
Sed0001418 Sechium edule HOM05D000143 ORTHO05D000072 2.6e-07 58.5 49 61.2
Atru.chr9.1948 Acer truncatum HOM05D000143 ORTHO05D000072 4.4e-07 57.8 51 56.9
AT4G10850 Arabidopsis thaliana HOM05D000143 ORTHO05D000072 4.4e-07 57.8 60 48.3
TAR374G0288 Trochodendron aralioides HOM05D000143 ORTHO05D000072 4.4e-07 57.8 47 57.4
CDE09G0820 Ceratophyllum demersum HOM05D000143 ORTHO05D000072 5.8e-07 57.4 45 64.4
Ciclev10024343m.g Citrus clementina HOM05D000143 ORTHO05D000072 5.8e-07 57.4 51 56.9
MELO3C005758.2 Cucumis melo HOM05D000143 ORTHO05D000072 5.8e-07 57.4 47 59.6
FAN18G3936 Fragaria x ananassa HOM05D000143 ORTHO05D000072 5.8e-07 57.4 45 62.2
Manes.02G006600 Manihot esculenta HOM05D000143 ORTHO05D000072 5.8e-07 57.4 67 47.8
CANSAT21G1128 Cannabis sativa HOM05D000143 ORTHO05D000072 7.5e-07 57.0 62 50.0
CsaV3_5G001950 Cucumis sativus L. HOM05D000143 ORTHO05D000072 7.5e-07 57.0 45 62.2
CiPaw.12G080600 Carya illinoinensis HOM05D000143 ORTHO05D000072 9.8e-07 56.6 63 46.0
Nn1g00305 Nelumbo nucifera HOM05D000143 ORTHO05D000072 9.8e-07 56.6 68 44.1
Sed0009302 Sechium edule HOM05D000143 ORTHO05D000072 9.8e-07 56.6 47 61.7
HPP92_023831 Vanilla planifolia HOM05D000143 ORTHO05D000072 9.8e-07 56.6 53 54.7
ATR0730G056 Amborella trichopoda HOM05D000143 ORTHO05D000072 1.3e-06 56.2 68 44.1
ECA240G0267 Erigeron canadensis HOM05D000143 ORTHO05D000072 1.3e-06 56.2 64 45.3
Zm00001eb236820 Zea mays HOM05D000143 ORTHO05D000072 1.3e-06 56.2 47 51.1
ECA246G5231 Erigeron canadensis HOM05D000143 ORTHO05D000072 1.7e-06 55.8 47 55.3
Sc01g0010450 Simmondsia chinensis HOM05D000143 ORTHO05D000072 1.7e-06 55.8 58 50.0
ClCG07G011360 Citrullus lanatus HOM05D000143 ORTHO05D000072 2.2e-06 55.5 47 59.6
DCAR_006508 Daucus carota HOM05D000143 ORTHO05D000072 2.2e-06 55.5 49 55.1
HanXRQChr13g0414941 Helianthus annuus HOM05D000143 ORTHO05D000072 2.2e-06 55.5 54 50.0
HPP92_023890 Vanilla planifolia HOM05D000143 ORTHO05D000072 2.9e-06 55.1 53 54.7
Cfa011967 Carpinus fangiana HOM05D000143 ORTHO05D000072 3.7e-06 54.7 47 53.2
Nitab4.5_0002367g0130 Nicotiana tabacum HOM05D000143 ORTHO05D000072 3.7e-06 54.7 48 54.2
MELO3C016259.2 Cucumis melo HOM05D000143 ORTHO05D000072 4.9e-06 54.3 61 50.8
Thhalv10027282m.g Eutrema salsugineum HOM05D000143 ORTHO05D000072 6.4e-06 53.9 56 51.8
HanXRQChr03g0083701 Helianthus annuus HOM05D000143 ORTHO05D000072 6.4e-06 53.9 43 55.8
HanXRQChr17g0534301 Helianthus annuus HOM05D000143 ORTHO05D000072 6.4e-06 53.9 38 65.8
Lsat_1_v5_gn_6_83401 Lactuca sativa HOM05D000143 ORTHO05D000072 6.4e-06 53.9 42 59.5
Peaxi162Scf00074g00434 Petunia axillaris HOM05D000143 ORTHO05D000072 6.4e-06 53.9 48 54.2
Nitab4.5_0002439g0020 Nicotiana tabacum HOM05D000143 ORTHO05D000072 8.3e-06 53.5 46 56.5
Os02g0301100 Oryza sativa ssp. japonica HOM05D000143 ORTHO05D000072 8.3e-06 53.5 55 49.1
Sed0022796 Sechium edule HOM05D000143 ORTHO05D000072 8.3e-06 53.5 44 61.4


User provided reference genes

Program Settings