Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 3.4e-161 571.6 294 100.0
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 4.1e-130 468.4 301 82.4
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 5.0e-120 434.9 295 79.0
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.2e-110 403.7 229 85.6
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 1.6e-105 386.7 291 71.5
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 5.9e-105 384.8 291 71.1
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 9.5e-103 377.5 296 69.6
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 8.0e-102 374.4 299 67.9
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 8.0e-102 374.4 235 77.0
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 5.7e-100 368.2 292 66.8
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 1.0e-96 357.5 294 63.9
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 1.3e-96 357.1 297 64.3
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 7.3e-95 351.3 302 63.6
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 1.0e-93 347.4 286 65.0
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.0e-93 347.4 252 69.0
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.8e-93 346.7 252 69.0
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 4.0e-93 345.5 282 63.8
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 6.8e-93 344.7 292 63.7
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 2.0e-92 343.2 302 61.6
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 2.6e-92 342.8 231 72.7
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 7.5e-92 341.3 297 63.6
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 1.3e-91 340.5 300 61.0
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 1.3e-91 340.5 293 59.7
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 1.7e-91 340.1 297 60.3
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 3.7e-91 339.0 261 65.5
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 6.4e-91 338.2 236 69.1
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 9.2e-90 334.3 299 58.9
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 9.2e-90 334.3 299 58.5
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 1.2e-89 334.0 295 62.0
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.2e-89 334.0 299 58.5
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 2.0e-89 333.2 301 59.8
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 2.0e-89 333.2 295 61.0
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 2.7e-89 332.8 271 62.7
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 2.7e-89 332.8 276 60.9
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 4.6e-89 332.0 236 69.5
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 4.6e-89 332.0 299 59.9
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 6.0e-89 331.6 234 68.4
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 7.8e-89 331.3 236 69.9
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 1.3e-88 330.5 289 61.2
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 2.3e-88 329.7 294 61.6
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 2.3e-88 329.7 285 62.5
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 3.0e-88 329.3 288 62.8
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 3.9e-88 328.9 300 59.7
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 1.1e-87 327.4 232 67.7
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 1.5e-87 327.0 236 66.1
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 1.9e-87 326.6 230 68.7
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 1.9e-87 326.6 235 69.4
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 1.9e-87 326.6 289 61.9
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 7.3e-87 324.7 279 61.6
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 7.3e-87 324.7 286 60.5
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 7.3e-87 324.7 296 59.1
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 1.6e-86 323.6 278 61.9
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 2.8e-86 322.8 302 57.6
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 2.8e-86 322.8 270 61.1
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 4.7e-86 322.0 234 67.1
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 4.7e-86 322.0 295 58.3
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.1e-85 320.9 307 56.0
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 1.4e-85 320.5 233 66.5
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 1.2e-84 317.4 232 65.9
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.2e-84 317.4 333 52.0
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 1.2e-84 317.4 238 66.0
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 2.6e-84 316.2 232 65.5
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 9.8e-84 314.3 241 63.9
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 1.3e-83 313.9 293 57.0
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 1.3e-83 313.9 293 57.3
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 2.2e-83 313.2 241 64.7
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 2.9e-83 312.8 218 68.3
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 3.7e-83 312.4 232 64.7
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 1.4e-82 310.5 233 64.4
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 2.4e-82 309.7 233 64.4
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 2.4e-82 309.7 233 64.4
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 2.4e-82 309.7 233 64.4
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 2.4e-82 309.7 233 64.4
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 2.4e-82 309.7 233 64.4
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 4.1e-82 308.9 291 55.7
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 2.1e-81 306.6 293 56.3
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 2.1e-81 306.6 293 56.7
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 2.7e-81 306.2 285 56.8
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 3.5e-81 305.8 219 67.1
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 6.0e-81 305.1 293 56.0
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 7.8e-81 304.7 278 58.6
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 1.0e-80 304.3 306 54.2
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 1.3e-80 303.9 296 56.8
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 2.3e-80 303.1 293 56.0
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 3.0e-80 302.8 299 55.5
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 3.9e-80 302.4 234 65.8
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 3.9e-80 302.4 273 57.5
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 3.9e-80 302.4 227 65.2
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 3.9e-80 302.4 227 65.2
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 5.1e-80 302.0 294 55.8
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 8.6e-80 301.2 298 55.4
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 8.6e-80 301.2 293 56.3
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 5.6e-79 298.5 292 55.8
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 6.2e-78 295.0 293 56.0
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 6.8e-77 291.6 339 47.5
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 4.4e-76 288.9 230 62.6
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 7.8e-73 278.1 292 54.8
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 4.7e-70 268.9 240 59.6
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 1.8e-61 240.4 300 47.7
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 2.4e-61 240.0 204 59.8
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 1.1e-55 221.1 152 71.1
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 1.1e-55 221.1 243 50.2
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 1.8e-53 213.8 233 50.2
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 9.3e-50 201.4 133 75.2
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 5.1e-48 195.7 192 52.6
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 3.7e-46 189.5 199 49.2
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 4.8e-46 189.1 187 55.6
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 1.3e-43 181.0 207 49.8
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 3.8e-43 179.5 214 43.0
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 6.5e-43 178.7 204 49.0
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 3.9e-40 169.5 161 54.7
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 1.1e-39 167.9 248 40.3
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 4.3e-39 166.0 205 41.5
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 1.9e-31 140.6 87 73.6
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 2.4e-29 133.7 122 55.7
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 7.2e-26 122.1 91 64.8
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 1.0e-24 118.2 90 63.3
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 1.7e-22 110.9 87 63.2
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 2.0e-20 104.0 149 43.0
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 3.6e-17 93.2 60 75.0
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 5.7e-15 85.9 183 29.5
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 1.8e-13 80.9 49 77.6
MCO09G217 Micromonas commoda HOM05D006484 ORTHO05D008002 1.8e-08 64.3 180 28.9
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 8.8e-08 62.0 99 44.4
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 1.5e-07 61.2 34 82.4
PRCOL_00006041 Prasinoderma coloniale HOM05D006484 ORTHO05D008002 4.4e-07 59.7 135 29.6


User provided reference genes

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