Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G229 Trifolium pratense HOM05D003225 ORTHO05D003818 3.1e-66 255.0 127 100.0
Psat6g063880 Pisum sativum HOM05D003225 ORTHO05D003818 6.0e-38 161.0 92 91.3
Medtr1g069320 Medicago truncatula HOM05D003225 ORTHO05D003818 1.0e-37 160.2 92 88.0
VMungo0720G1232 Vigna mungo HOM05D003225 ORTHO05D003818 1.1e-36 156.8 90 87.8
Glyma.10G041500 Glycine max HOM05D003225 ORTHO05D003818 1.9e-36 156.0 90 86.7
Ca_09633_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 3.3e-36 155.2 109 78.0
Phvul.007G154800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 5.6e-36 154.5 90 86.7
Lj5g0003408 Lotus japonicus HOM05D003225 ORTHO05D003818 1.1e-34 150.2 91 85.7
arahy.Tifrunner.gnm1.ann1.C1DUQD Arachis hypogaea HOM05D003225 ORTHO05D003818 1.5e-33 146.4 92 81.5
arahy.Tifrunner.gnm1.ann1.E3U1P5 Arachis hypogaea HOM05D003225 ORTHO05D003818 1.5e-33 146.4 92 81.5
Medtr7g099270 Medicago truncatula HOM05D003225 ORTHO05D003818 4.2e-31 138.3 92 76.1
Lalb_Chr06g0170821 Lupinus albus HOM05D003225 ORTHO05D003818 9.3e-31 137.1 92 76.1
Lalb_Chr06g0170851 Lupinus albus HOM05D003225 ORTHO05D003818 9.3e-31 137.1 92 76.1
Lalb_Chr02g0152871 Lupinus albus HOM05D003225 ORTHO05D003818 1.6e-30 136.3 81 81.5
Lj5g0007325 Lotus japonicus HOM05D003225 ORTHO05D003818 2.7e-30 135.6 80 81.2
FAN15G1218 Fragaria x ananassa HOM05D003225 ORTHO05D003818 1.3e-29 133.3 85 74.1
Psat6g063920 Pisum sativum HOM05D003225 ORTHO05D003818 1.8e-29 132.9 92 71.7
Phvul.001G167800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 3.0e-29 132.1 80 76.2
Medtr1g069325 Medicago truncatula HOM05D003225 ORTHO05D003818 3.9e-29 131.7 92 69.6
Phvul.007G154700 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 3.9e-29 131.7 81 77.8
FAN24G0301 Fragaria x ananassa HOM05D003225 ORTHO05D003818 5.1e-29 131.3 85 72.9
Psat3g051960 Pisum sativum HOM05D003225 ORTHO05D003818 8.7e-29 130.6 82 78.0
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.1e-28 130.2 91 72.5
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.1e-28 130.2 91 72.5
Glyma.03G169300 Glycine max HOM05D003225 ORTHO05D003818 1.5e-28 129.8 79 79.7
VMungo1383G0903 Vigna mungo HOM05D003225 ORTHO05D003818 1.5e-28 129.8 92 69.6
Ciclev10020430m.g Citrus clementina HOM05D003225 ORTHO05D003818 1.9e-28 129.4 88 71.6
Actinidia30111 Actinidia chinensis HOM05D003225 ORTHO05D003818 2.5e-28 129.0 79 75.9
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 2.5e-28 129.0 91 71.4
CiPaw.03G272800 Carya illinoinensis HOM05D003225 ORTHO05D003818 3.3e-28 128.6 91 68.1
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.3e-28 128.3 91 67.0
Lj1g0002088 Lotus japonicus HOM05D003225 ORTHO05D003818 4.3e-28 128.3 90 71.1
MD10G1173500 Malus domestica HOM05D003225 ORTHO05D003818 4.3e-28 128.3 89 69.7
Ah.08g213770 Amaranthus hybridus HOM05D003225 ORTHO05D003818 5.6e-28 127.9 90 68.9
Cfa002504 Carpinus fangiana HOM05D003225 ORTHO05D003818 7.4e-28 127.5 91 68.1
FvH4_2g20180 Fragaria vesca HOM05D003225 ORTHO05D003818 7.4e-28 127.5 79 74.7
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 7.4e-28 127.5 79 78.5
QL09p042915 Quercus lobata HOM05D003225 ORTHO05D003818 9.6e-28 127.1 91 69.2
GSVIVG01028465001 Vitis vinifera HOM05D003225 ORTHO05D003818 9.6e-28 127.1 92 68.5
AL7G23810 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 1.3e-27 126.7 79 73.4
Duzib138G1039 Durio zibethinus HOM05D003225 ORTHO05D003818 1.3e-27 126.7 89 68.5
AT4G28706 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 2.1e-27 125.9 77 74.0
arahy.Tifrunner.gnm1.ann1.B239PN Arachis hypogaea HOM05D003225 ORTHO05D003818 2.1e-27 125.9 122 59.0
Sopen08g026860 Solanum pennellii HOM05D003225 ORTHO05D003818 2.1e-27 125.9 78 74.4
Thecc.01G246600 Theobroma cacao HOM05D003225 ORTHO05D003818 2.1e-27 125.9 80 72.5
Nitab4.5_0003050g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 2.8e-27 125.6 79 73.4
PGSC0003DMG400009744 Solanum tuberosum HOM05D003225 ORTHO05D003818 2.8e-27 125.6 79 75.9
CSS0034606 Camellia sinensis var. sinensis HOM05D003225 ORTHO05D003818 3.7e-27 125.2 79 70.9
MELO3C012819.2 Cucumis melo HOM05D003225 ORTHO05D003818 3.7e-27 125.2 91 68.1
ClCG07G001550 Citrullus lanatus HOM05D003225 ORTHO05D003818 4.8e-27 124.8 91 68.1
Eucgr.L03567 Eucalyptus grandis HOM05D003225 ORTHO05D003818 4.8e-27 124.8 80 73.8
Thhalv10025355m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 4.8e-27 124.8 76 75.0
Gorai.004G057700 Gossypium raimondii HOM05D003225 ORTHO05D003818 4.8e-27 124.8 89 68.5
Nitab4.5_0000392g0040 Nicotiana tabacum HOM05D003225 ORTHO05D003818 4.8e-27 124.8 80 72.5
PSO063G6030 Papaver somniferum HOM05D003225 ORTHO05D003818 4.8e-27 124.8 84 70.2
COL.COLO4_24810 Corchorus olitorius HOM05D003225 ORTHO05D003818 6.2e-27 124.4 79 72.2
Potri.002G254500 Populus trichocarpa HOM05D003225 ORTHO05D003818 6.2e-27 124.4 91 64.8
Solyc08g078370.4 Solanum lycopersicum HOM05D003225 ORTHO05D003818 6.2e-27 124.4 78 73.1
CiPaw.04G191600 Carya illinoinensis HOM05D003225 ORTHO05D003818 8.2e-27 124.0 92 66.3
CsaV3_3G028560 Cucumis sativus L. HOM05D003225 ORTHO05D003818 8.2e-27 124.0 91 67.0
Sopen09g025450 Solanum pennellii HOM05D003225 ORTHO05D003818 8.2e-27 124.0 79 74.7
TWI12G1380 Tripterygium wilfordii HOM05D003225 ORTHO05D003818 8.2e-27 124.0 79 73.4
CARHR236490 Cardamine hirsuta HOM05D003225 ORTHO05D003818 1.1e-26 123.6 76 75.0
Cpa.g.sc87.67 Carica papaya HOM05D003225 ORTHO05D003818 1.1e-26 123.6 86 70.9
Prupe.8G212100 Prunus persica HOM05D003225 ORTHO05D003818 1.1e-26 123.6 89 66.3
Cc01_g17600 Coffea canephora HOM05D003225 ORTHO05D003818 1.4e-26 123.2 89 67.4
Gohir.D07G209300 Gossypium hirsutum HOM05D003225 ORTHO05D003818 1.4e-26 123.2 87 67.8
Manes.12G039500 Manihot esculenta HOM05D003225 ORTHO05D003818 1.4e-26 123.2 90 64.4
RcHm_v2.0_Chr6g0285941 Rosa chinensis HOM05D003225 ORTHO05D003818 1.4e-26 123.2 79 72.2
Gohir.A08G046100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 1.8e-26 122.9 89 67.4
Gorai.001G236300 Gossypium raimondii HOM05D003225 ORTHO05D003818 1.8e-26 122.9 87 67.8
VMungo1383G3625 Vigna mungo HOM05D003225 ORTHO05D003818 1.8e-26 122.9 90 65.6
Carub.0007s1194 Capsella rubella HOM05D003225 ORTHO05D003818 2.4e-26 122.5 76 73.7
Solyc09g064240.3 Solanum lycopersicum HOM05D003225 ORTHO05D003818 2.4e-26 122.5 79 73.4
CSS0038579 Camellia sinensis var. sinensis HOM05D003225 ORTHO05D003818 3.1e-26 122.1 89 67.4
MD05G1185300 Malus domestica HOM05D003225 ORTHO05D003818 3.1e-26 122.1 89 65.2
Medtr7g099280 Medicago truncatula HOM05D003225 ORTHO05D003818 3.1e-26 122.1 89 67.4
Peaxi162Scf00043g01711 Petunia axillaris HOM05D003225 ORTHO05D003818 3.1e-26 122.1 80 71.2
BraA01t00866Z Brassica rapa HOM05D000200 ORTHO05D000262 4.0e-26 121.7 78 70.5
AUR62008832 Chenopodium quinoa HOM05D003225 ORTHO05D003818 4.0e-26 121.7 79 72.2
Gohir.D08G056600 Gossypium hirsutum HOM05D003225 ORTHO05D003818 4.0e-26 121.7 79 72.2
Hma1.2p1_2051F.1_g312650 Hydrangea macrophylla HOM05D003225 ORTHO05D003818 4.0e-26 121.7 79 73.4
Sp7g26690 Schrenkiella parvula HOM05D003225 ORTHO05D003818 4.0e-26 121.7 98 60.2
TAR365G0417 Trochodendron aralioides HOM05D003225 ORTHO05D003818 4.0e-26 121.7 83 72.3
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 5.3e-26 121.3 78 69.2
ClCG07G001530 Citrullus lanatus HOM05D003225 ORTHO05D003818 5.3e-26 121.3 105 59.0
Cc01_g17560 Coffea canephora HOM05D003225 ORTHO05D003818 5.3e-26 121.3 89 67.4
Eucgr.H00838 Eucalyptus grandis HOM05D003225 ORTHO05D003818 5.3e-26 121.3 79 69.6
Gohir.A07G203100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 5.3e-26 121.3 87 67.8
Glyma.03G169400 Glycine max HOM05D003225 ORTHO05D003818 6.9e-26 120.9 79 72.2
PGR083G1413 Punica granatum HOM05D003225 ORTHO05D003818 6.9e-26 120.9 79 70.9
THA.LOC104804033 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 6.9e-26 120.9 79 70.9
Atru.chr5.1956 Acer truncatum HOM05D003225 ORTHO05D003818 9.0e-26 120.6 78 73.1
CiPaw.04G191700 Carya illinoinensis HOM05D003225 ORTHO05D003818 9.0e-26 120.6 89 66.3
arahy.Tifrunner.gnm1.ann1.ZCX39R Arachis hypogaea HOM05D003225 ORTHO05D003818 1.2e-25 120.2 79 70.9
BcaNung01374 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-25 120.2 77 70.1
C01p10810 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-25 120.2 77 70.1
BolC1t01042H Brassica oleracea HOM05D000200 ORTHO05D000262 1.2e-25 120.2 77 70.1
Aa31LG2G21670 Aethionema arabicum HOM05D003225 ORTHO05D003818 1.5e-25 119.8 76 73.7
EL10Ac7g17735 Beta vulgaris HOM05D003225 ORTHO05D003818 1.5e-25 119.8 79 70.9
CANSAT01G1040 Cannabis sativa HOM05D003225 ORTHO05D003818 1.5e-25 119.8 80 70.0
CANSAT01G2940 Cannabis sativa HOM05D003225 ORTHO05D003818 1.5e-25 119.8 80 70.0
Peaxi162Scf00214g00026 Petunia axillaris HOM05D003225 ORTHO05D003818 1.5e-25 119.8 79 70.9
Nitab4.5_0001381g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 2.0e-25 119.4 79 70.9
Sed0003992 Sechium edule HOM05D003225 ORTHO05D003818 2.0e-25 119.4 79 70.9
BcaNung04702 Brassica carinata HOM05D000200 ORTHO05D003818 2.6e-25 119.0 79 68.4
DCAR_004696 Daucus carota HOM05D003225 ORTHO05D003818 2.6e-25 119.0 83 69.9
Eucgr.K03579 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.6e-25 119.0 77 71.4
Lalb_Chr02g0152831 Lupinus albus HOM05D003225 ORTHO05D003818 2.6e-25 119.0 80 70.0
VMungo0720G1759 Vigna mungo HOM05D003225 ORTHO05D003818 2.6e-25 119.0 79 72.2
Lsat_1_v5_gn_5_180041 Lactuca sativa HOM05D003225 ORTHO05D003818 3.4e-25 118.6 78 69.2
Nitab4.5_0000385g0120 Nicotiana tabacum HOM05D003225 ORTHO05D003818 3.4e-25 118.6 80 71.2
PGR083G2794 Punica granatum HOM05D003225 ORTHO05D003818 3.4e-25 118.6 82 65.9
Hund05508 Selenicereus undatus HOM05D003225 ORTHO05D003818 3.4e-25 118.6 95 62.1
HanXRQChr10g0280301 Helianthus annuus HOM05D003225 ORTHO05D003818 4.5e-25 118.2 78 70.5
arahy.Tifrunner.gnm1.ann1.5QC4GP Arachis hypogaea HOM05D003225 ORTHO05D003818 5.8e-25 117.9 80 67.5
arahy.Tifrunner.gnm1.ann1.P4ZHWF Arachis hypogaea HOM05D003225 ORTHO05D003818 5.8e-25 117.9 82 64.6
Migut.D00492 Erythranthe guttata HOM05D003225 ORTHO05D003818 5.8e-25 117.9 81 70.4
SEGI_31401 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 7.6e-25 117.5 85 67.1
Aqoxy5G00087 Aquilegia oxysepala HOM05D003225 ORTHO05D003818 1.0e-24 117.1 83 69.9
Eucgr.H00836 Eucalyptus grandis HOM05D003225 ORTHO05D003818 1.0e-24 117.1 79 67.1
ECA247G2482 Erigeron canadensis HOM05D003225 ORTHO05D003818 1.7e-24 116.3 78 67.9
Glyma.13G128300 Glycine max HOM05D003225 ORTHO05D003818 1.7e-24 116.3 89 67.4
Sc02g0004250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 1.7e-24 116.3 79 68.4
unitig_26.g9791 Utricularia gibba HOM05D003225 ORTHO05D003818 1.7e-24 116.3 79 68.4
arahy.Tifrunner.gnm1.ann1.UB37AI Arachis hypogaea HOM05D003225 ORTHO05D003818 3.8e-24 115.2 80 67.5
Hund05507 Selenicereus undatus HOM05D003225 ORTHO05D003818 8.4e-24 114.0 80 65.0
Eucgr.L01052 Eucalyptus grandis HOM05D003225 ORTHO05D003818 1.1e-23 113.6 89 61.8
Nn1g03053 Nelumbo nucifera HOM05D003225 ORTHO05D003818 1.1e-23 113.6 84 63.1
Peaxi162Scf01083g00112 Petunia axillaris HOM05D003225 ORTHO05D003818 1.1e-23 113.6 79 64.6
CDE05G2850 Ceratophyllum demersum HOM05D003225 ORTHO05D003818 1.4e-23 113.2 94 61.7
Glyma.10G041400 Glycine max HOM05D003225 ORTHO05D003818 1.4e-23 113.2 80 68.8
arahy.Tifrunner.gnm1.ann1.D8W1EX Arachis hypogaea HOM05D003225 ORTHO05D003818 1.9e-23 112.8 80 63.8
HanXRQChr01g0014831 Helianthus annuus HOM05D003225 ORTHO05D003818 2.5e-23 112.5 78 64.1
ATR0088G044 Amborella trichopoda HOM05D003225 ORTHO05D003818 5.5e-23 111.3 76 69.7
Migut.N02238 Erythranthe guttata HOM05D003225 ORTHO05D003818 5.5e-23 111.3 87 60.9
Zm00001eb034820 Zea mays HOM05D003225 ORTHO05D003818 5.5e-23 111.3 96 53.1
ECA248G2748 Erigeron canadensis HOM05D003225 ORTHO05D003818 7.1e-23 110.9 76 64.5
Lsat_1_v5_gn_9_11840 Lactuca sativa HOM05D003225 ORTHO05D003818 9.3e-23 110.5 76 68.4
Os08g0566400 Oryza sativa ssp. japonica HOM05D003225 ORTHO05D003818 9.3e-23 110.5 84 60.7
Ah.15g091560 Amaranthus hybridus HOM05D003225 ORTHO05D003818 1.2e-22 110.2 78 66.7
Sc17g0002250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 1.0e-21 107.1 79 63.3
PGR044G1760 Punica granatum HOM05D003225 ORTHO05D003818 3.0e-21 105.5 64 75.0
PGR083G1634 Punica granatum HOM05D003225 ORTHO05D003818 3.9e-21 105.1 89 59.6
THA.LOC104826056 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 1.5e-20 103.2 79 65.8
PGR083G0944 Punica granatum HOM05D003225 ORTHO05D003818 2.5e-20 102.4 63 74.6
AUR62025409 Chenopodium quinoa HOM05D003225 ORTHO05D003818 5.7e-20 101.3 81 63.0
Nitab4.5_0007181g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 9.7e-20 100.5 78 65.4
AUR62008831 Chenopodium quinoa HOM05D003225 ORTHO05D003818 1.3e-19 100.1 93 57.0
Lalb_Chr25g0289811 Lupinus albus HOM05D003225 ORTHO05D003818 1.3e-19 100.1 63 73.0
PGR083G1209 Punica granatum HOM05D003225 ORTHO05D003818 1.6e-19 99.8 60 73.3
AagrBONN_evm.TU.Sc2ySwM_344.4900 Anthoceros agrestis HOM05D003225 ORTHO05D003818 5.3e-18 94.7 74 62.2
PGSC0003DMG401025696 Solanum tuberosum HOM05D003225 ORTHO05D003818 2.6e-17 92.4 64 64.1
AT5G43910 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 5.9e-17 91.3 70 62.9
AL8G16220 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 7.6e-17 90.9 70 61.4
Carub.0008s0468 Capsella rubella HOM05D003225 ORTHO05D003818 7.6e-17 90.9 70 62.9
Mapoly0004s0194 Marchantia polymorpha HOM05D003225 ORTHO05D003818 1.0e-16 90.5 65 61.5
CARHR179520 Cardamine hirsuta HOM05D003225 ORTHO05D003818 6.5e-16 87.8 68 60.3
BcaC06g34611 Brassica carinata HOM05D000200 ORTHO05D000262 8.5e-16 87.4 70 58.6
BolC7t43177H Brassica oleracea HOM05D003225 ORTHO05D003818 8.5e-16 87.4 70 58.6
arahy.Tifrunner.gnm1.ann1.5ZSF1B Arachis hypogaea HOM05D003225 ORTHO05D003818 1.9e-15 86.3 88 53.4
CBR_g19222 Chara braunii HOM05D003225 ORTHO05D003818 2.5e-15 85.9 78 55.1
BcaC06g31670 Brassica carinata HOM05D003225 ORTHO05D003818 5.5e-15 84.7 70 55.7
Pp3c16_16280 Physcomitrium patens HOM05D003225 ORTHO05D003818 5.5e-15 84.7 78 55.1
Aa31LG5G3370 Aethionema arabicum HOM05D003225 ORTHO05D003818 7.2e-15 84.3 85 51.8
BraA06t27630Z Brassica rapa HOM05D003225 ORTHO05D003818 2.1e-14 82.8 70 55.7
Haze_24728 Corylus avellana HOM05D003225 ORTHO05D003818 2.3e-13 79.3 79 50.6
Rhsim01G0259300 Rhododendron simsii HOM05D003225 ORTHO05D003818 3.0e-13 79.0 44 79.5
Lj2C1140G2 Lonicera japonica HOM05D003225 ORTHO05D001460 1.1e-12 77.0 57 63.2
CAN.G1178.13 Capsicum annuum HOM05D003225 ORTHO05D003818 4.3e-12 75.1 56 62.5
Thhalv10003370m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 2.8e-11 72.4 54 63.0
Nitab4.5_0001590g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 4.8e-11 71.6 45 71.1
CDE05G0580 Ceratophyllum demersum HOM05D003225 ORTHO05D003818 6.3e-11 71.2 54 63.0
SGA_v2.0_scaffold32G13038 Striga asiatica HOM05D003225 ORTHO05D003818 8.2e-11 70.9 43 76.7
C07p26480 Brassica napus HOM05D003225 ORTHO05D003818 1.8e-10 69.7 54 59.3
Psat4g116800 Pisum sativum HOM05D003225 ORTHO05D003818 1.8e-10 69.7 45 71.1
A06p47620 Brassica napus HOM05D003225 ORTHO05D003818 5.3e-10 68.2 54 57.4
HPP92_025819 Vanilla planifolia HOM05D003225 ORTHO05D003818 5.3e-10 68.2 46 63.0
Cre01.g045640 Chlamydomonas reinhardtii HOM05D003225 ORTHO05D003818 2.9e-08 62.4 71 39.4
SEGI_36493 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 3.8e-08 62.0 51 56.9
vmacro14785 Vaccinium macrocarpon HOM05D003225 ORTHO05D003818 7.2e-07 57.8 95 36.8
C03p82370 Brassica napus HOM05D003225 ORTHO05D003818 1.6e-06 56.6 62 46.8
MCO09G811 Micromonas commoda HOM05D003225 ORTHO05D003818 2.7e-06 55.8 73 39.7


User provided reference genes

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