Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22845 Trifolium pratense HOM05D003216 ORTHO05D002268 4.5e-100 367.9 176 100.0
TPR.G8656 Trifolium pratense HOM05D003216 ORTHO05D002268 2.5e-90 335.5 176 90.9
TPR.G14065 Trifolium pratense HOM05D003216 ORTHO05D002268 9.2e-37 157.5 177 44.6
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 1.2e-36 157.1 167 46.7
TPR.G28459 Trifolium pratense HOM05D003216 ORTHO05D002268 3.5e-36 155.6 176 43.8
TPR.G35306 Trifolium pratense HOM05D003216 ORTHO05D002268 6.0e-36 154.8 167 46.7
TPR.G14425 Trifolium pratense HOM05D003216 ORTHO05D002268 3.0e-35 152.5 167 46.1
TPR.G31202 Trifolium pratense HOM05D009380 ORTHO05D009933 2.5e-34 149.4 168 45.8
TPR.G28022 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-33 147.1 164 45.1
TPR.G17160 Trifolium pratense HOM05D003216 ORTHO05D002268 1.1e-32 144.1 177 41.8
TPR.G8192 Trifolium pratense HOM05D003216 ORTHO05D002268 1.4e-32 143.7 150 46.7
TPR.G20359 Trifolium pratense HOM05D003216 ORTHO05D002268 3.1e-32 142.5 157 45.9
TPR.G22718 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-31 140.6 164 43.3
TPR.G25329 Trifolium pratense HOM05D009380 ORTHO05D009933 3.4e-31 139.0 141 46.8
TPR.G40558 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-30 136.7 166 42.2
TPR.G36380 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-29 133.3 175 40.6
TPR.G31505 Trifolium pratense HOM05D003216 ORTHO05D002268 7.1e-29 131.3 163 42.3
TPR.G9575 Trifolium pratense HOM05D003216 ORTHO05D009933 2.7e-28 129.4 152 42.1
TPR.G20309 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-27 126.7 128 47.7
TPR.G22805 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-27 126.7 111 49.5
Medtr3g014480 Medicago truncatula HOM05D003216 ORTHO05D002268 3.9e-27 125.6 174 35.1
Medtr3g032550 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-27 125.2 157 36.9
TPR.G38871 Trifolium pratense HOM05D003216 ORTHO05D002268 6.6e-27 124.8 115 50.4
Medtr8g040220 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-26 123.2 135 41.5
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 9.6e-26 120.9 149 40.9
TPR.G40729 Trifolium pratense HOM05D003216 ORTHO05D002268 9.6e-26 120.9 124 46.0
Medtr3g437080 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-25 119.0 127 42.5
Medtr4g132765 Medicago truncatula HOM05D003216 ORTHO05D002268 4.7e-25 118.6 159 36.5
Medtr1g051465 Medicago truncatula HOM05D003216 ORTHO05D002268 6.2e-25 118.2 176 34.7
TPR.G17165 Trifolium pratense HOM05D003216 ORTHO05D002268 6.2e-25 118.2 173 35.3
Medtr5g062340 Medicago truncatula HOM05D003216 ORTHO05D002268 8.1e-25 117.9 171 35.1
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 8.1e-25 117.9 176 34.7
Medtr8g017510 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-24 117.1 159 37.1
Medtr4g113170 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-24 116.7 151 35.1
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 2.4e-24 116.3 176 34.7
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-24 115.9 171 34.5
TPR.G754 Trifolium pratense HOM05D003216 ORTHO05D002268 4.0e-24 115.5 115 49.6
TPR.G7282 Trifolium pratense HOM05D003216 ORTHO05D002268 9.0e-24 114.4 115 49.6
Medtr7g006230 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-23 114.0 156 36.5
Medtr5g018790 Medicago truncatula HOM05D003216 ORTHO05D002268 2.0e-23 113.2 171 34.5
Medtr2g461120 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-23 112.5 150 38.0
Medtr2g061890 Medicago truncatula HOM05D003216 ORTHO05D002268 4.9e-22 108.6 159 34.6
Medtr1g016820 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-22 108.2 179 34.1
Medtr8g468040 Medicago truncatula HOM05D003216 ORTHO05D002268 4.2e-21 105.5 161 34.8
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 5.4e-21 105.1 156 35.3
Medtr6g035400 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-20 104.0 159 33.3
TPR.G14047 Trifolium pratense HOM05D003216 ORTHO05D002268 1.6e-20 103.6 121 44.6
Medtr4g065057 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-20 103.2 167 34.7
TPR.G40026 Trifolium pratense HOM05D003216 ORTHO05D002268 6.0e-20 101.7 103 46.6
Medtr6g084230 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-19 100.1 159 34.0
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-19 100.1 105 48.6
TPR.G27562 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-19 100.1 99 43.4
TPR.G32043 Trifolium pratense HOM05D003216 ORTHO05D002268 2.3e-19 99.8 99 43.4
Medtr1g064700 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-19 98.6 136 35.3
TPR.G16425 Trifolium pratense HOM05D003216 ORTHO05D002268 5.1e-19 98.6 99 44.4
Medtr7g024793 Medicago truncatula HOM05D003216 ORTHO05D002268 8.7e-19 97.8 112 39.3
TPR.G17632 Trifolium pratense HOM05D003216 ORTHO05D002268 8.7e-19 97.8 99 44.4
Medtr5g039360 Medicago truncatula HOM05D003216 ORTHO05D002268 2.8e-17 92.8 117 37.6
Medtr8g409330 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-16 90.9 176 30.7
Medtr2g436740 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-16 90.1 108 37.0
Medtr4g048540 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-16 90.1 129 35.7
Medtr7g056013 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-15 87.4 158 29.7
TPR.G17604 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-15 87.4 96 47.9
Medtr8g463980 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-15 87.0 155 28.4
Medtr4g015450 Medicago truncatula HOM05D003216 ORTHO05D010126 5.8e-15 85.1 101 41.6
Medtr5g037560 Medicago truncatula HOM05D003216 ORTHO05D002268 5.8e-15 85.1 126 34.1
Medtr2g067680 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-15 84.7 112 34.8
Medtr7g095760 Medicago truncatula HOM05D003216 ORTHO05D002268 9.9e-15 84.3 107 36.4
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 2.9e-14 82.8 89 39.3
TPR.G30425 Trifolium pratense HOM05D003216 ORTHO05D002268 4.9e-14 82.0 99 44.4
Medtr1g101180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-13 80.5 154 27.3
Medtr3g087410 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-13 80.1 159 29.6
TPR.G1696 Trifolium pratense HOM05D009380 ORTHO05D009933 2.4e-13 79.7 102 46.1
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 3.2e-13 79.3 158 30.4
Medtr7g069450 Medicago truncatula HOM05D003216 ORTHO05D002268 4.2e-13 79.0 93 36.6
Medtr6g086765 Medicago truncatula HOM05D003216 ORTHO05D002268 7.1e-13 78.2 111 39.6
Medtr3g044770 Medicago truncatula HOM05D003216 ORTHO05D002268 9.3e-13 77.8 99 40.4
TPR.G38697 Trifolium pratense HOM05D003216 ORTHO05D002268 9.3e-13 77.8 78 43.6
CSS0016602 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.2e-12 77.4 154 31.2
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 6.0e-12 75.1 120 35.0
TWI73G0339 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 6.0e-12 75.1 110 40.0
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 7.9e-12 74.7 120 34.2
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 7.9e-12 74.7 151 29.1
MD05G1031400 Malus domestica HOM05D000593 ORTHO05D000562 1.0e-11 74.3 113 34.5
Medtr2g034775 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-11 73.9 88 40.9
Ca_01383_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 2.3e-11 73.2 142 32.4
Medtr7g004990 Medicago truncatula HOM05D003216 ORTHO05D002268 3.0e-11 72.8 106 34.0
RcHm_v2.0_Chr1g0329481 Rosa chinensis HOM05D000593 ORTHO05D000562 3.9e-11 72.4 116 33.6
CSS0030203 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 5.1e-11 72.0 164 29.3
Rhsim01G0176400 Rhododendron simsii HOM05D003216 ORTHO05D002268 5.1e-11 72.0 117 35.9
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 5.1e-11 72.0 117 35.9
TPR.G40224 Trifolium pratense HOM05D003216 ORTHO05D002268 5.1e-11 72.0 98 42.9
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 6.7e-11 71.6 106 35.8
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.1e-10 70.9 153 26.1
Aqoxy1G00859 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 1.9e-10 70.1 169 30.2
Aqoxy5G01684 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 1.9e-10 70.1 169 30.2
CSS0037267 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.9e-10 70.1 104 33.7
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 2.5e-10 69.7 113 33.6
CSS0019902 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.3e-10 69.3 116 34.5
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.3e-10 69.3 114 31.6
Ca_05375_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 4.3e-10 68.9 98 39.8
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 5.6e-10 68.6 94 40.4
PSO729G0006 Papaver somniferum HOM05D013875 ORTHO05D002268 5.6e-10 68.6 136 30.9
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 7.4e-10 68.2 113 34.5
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 7.4e-10 68.2 113 34.5
Ca_13826_v3 Cicer arietinum L. HOM05D000593 ORTHO05D004526 7.4e-10 68.2 92 41.3
CSS0009299 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.6e-09 67.0 114 31.6
Atru.chr2.576 Acer truncatum HOM05D000593 ORTHO05D000562 2.1e-09 66.6 151 28.5
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 2.1e-09 66.6 105 32.4
Medtr3g072200 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-09 66.6 83 39.8
Medtr8g463970 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-09 66.6 89 41.6
Atru.chr4.890 Acer truncatum HOM05D000593 ORTHO05D000562 2.8e-09 66.2 159 27.7
CSS0004654 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.8e-09 66.2 114 31.6
Medtr3g088695 Medicago truncatula HOM05D003216 ORTHO05D002268 4.8e-09 65.5 83 41.0
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.2e-09 65.1 136 33.1
Ca_14497_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 8.1e-09 64.7 95 35.8
Medtr2g461930 Medicago truncatula HOM05D003216 ORTHO05D002268 8.1e-09 64.7 150 28.7
Medtr5g017770 Medicago truncatula HOM05D003216 ORTHO05D002268 8.1e-09 64.7 84 38.1
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 1.4e-08 63.9 106 32.1
CSS0013856 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.8e-08 63.5 110 33.6
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.8e-08 63.5 110 34.5
Medtr3g104445 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-08 63.5 87 37.9
Medtr6g084295 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-08 63.5 49 51.0
Medtr5g032220 Medicago truncatula HOM05D000593 ORTHO05D000562 2.4e-08 63.2 107 33.6
CSS0014323 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 5.3e-08 62.0 104 32.7
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 5.3e-08 62.0 96 38.5
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 6.9e-08 61.6 95 32.6
Medtr2g026620 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-08 61.6 91 39.6
Medtr5g006100 Medicago truncatula HOM05D003216 ORTHO05D004526 6.9e-08 61.6 88 36.4
Ca_25321_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 9.0e-08 61.2 95 32.6
Medtr6g089230 Medicago truncatula HOM05D003216 ORTHO05D004526 9.0e-08 61.2 62 41.9
TWI53G1229 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 9.0e-08 61.2 158 25.9
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.2e-07 60.8 95 32.6
Medtr4g050580 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-07 60.8 88 36.4
TPR.G29741 Trifolium pratense HOM05D000593 ORTHO05D002268 1.2e-07 60.8 70 47.1
Atru.chr11.19 Acer truncatum HOM05D000593 ORTHO05D000562 1.5e-07 60.5 106 33.0
Atru.chr11.22 Acer truncatum HOM05D000593 ORTHO05D000562 1.5e-07 60.5 106 33.0
Aqoxy3G00378 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 2.0e-07 60.1 95 42.1
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 2.6e-07 59.7 79 36.7
FvH4_6g12551 Fragaria vesca HOM05D000593 ORTHO05D002268 3.4e-07 59.3 131 29.0
TWI15G1236 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.5e-07 58.9 120 27.5
Aqoxy7G02090 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 5.8e-07 58.5 80 40.0
PSO729G0107 Papaver somniferum HOM05D013875 ORTHO05D002268 5.8e-07 58.5 103 30.1
Medtr3g463860 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-07 58.2 106 30.2
Medtr8g445710 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-07 58.2 83 37.3
PSO190G0002 Papaver somniferum HOM05D013875 ORTHO05D002268 7.6e-07 58.2 106 30.2
PSO601G0026 Papaver somniferum HOM05D013875 ORTHO05D002268 7.6e-07 58.2 106 30.2
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 7.6e-07 58.2 76 36.8
CANSAT54G0060 Cannabis sativa HOM05D003216 ORTHO05D002268 9.9e-07 57.8 117 29.1
Medtr5g028280 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-06 57.4 69 40.6
TWI74G1657 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 1.3e-06 57.4 155 29.0
CSS0005100 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.7e-06 57.0 115 29.6
Atru.chr11.1014 Acer truncatum HOM05D000593 ORTHO05D000562 2.9e-06 56.2 106 28.3
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.9e-06 56.2 93 34.4
CANSAT01G1396 Cannabis sativa HOM05D000593 ORTHO05D000562 3.8e-06 55.8 77 40.3
Medtr2g067910 Medicago truncatula HOM05D003216 ORTHO05D002268 3.8e-06 55.8 55 36.4
TPR.G30694 Trifolium pratense HOM05D003216 ORTHO05D002268 4.9e-06 55.5 52 42.3
Medtr1g089160 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-06 55.1 81 35.8


User provided reference genes

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