Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22805 Trifolium pratense HOM05D003216 ORTHO05D002268 8.3e-60 233.4 111 100.0
TPR.G28022 Trifolium pratense HOM05D003216 ORTHO05D002268 6.8e-54 213.8 107 93.5
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 3.4e-53 211.5 108 88.0
TPR.G22718 Trifolium pratense HOM05D003216 ORTHO05D002268 5.8e-53 210.7 107 92.5
TPR.G20309 Trifolium pratense HOM05D003216 ORTHO05D002268 3.5e-50 201.4 108 85.2
TPR.G35306 Trifolium pratense HOM05D003216 ORTHO05D002268 3.0e-49 198.4 109 78.9
TPR.G31202 Trifolium pratense HOM05D009380 ORTHO05D009933 5.1e-49 197.6 108 82.4
TPR.G14425 Trifolium pratense HOM05D003216 ORTHO05D002268 6.6e-49 197.2 108 82.4
TPR.G8192 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-48 195.7 109 76.1
TPR.G9575 Trifolium pratense HOM05D003216 ORTHO05D009933 2.4e-46 188.7 107 80.4
TPR.G38871 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-45 186.4 100 85.0
TPR.G25329 Trifolium pratense HOM05D009380 ORTHO05D009933 6.4e-44 180.6 95 84.2
TPR.G31505 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-42 176.4 109 70.6
TPR.G36380 Trifolium pratense HOM05D003216 ORTHO05D002268 2.7e-34 148.7 107 60.7
TPR.G28459 Trifolium pratense HOM05D003216 ORTHO05D002268 6.2e-31 137.5 105 58.1
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-28 129.0 102 59.8
TPR.G22845 Trifolium pratense HOM05D003216 ORTHO05D002268 3.8e-28 128.3 111 49.5
TPR.G8656 Trifolium pratense HOM05D003216 ORTHO05D002268 4.2e-27 124.8 108 49.1
TPR.G14065 Trifolium pratense HOM05D003216 ORTHO05D002268 9.3e-27 123.6 108 52.8
TPR.G40729 Trifolium pratense HOM05D003216 ORTHO05D002268 3.5e-26 121.7 109 55.0
TPR.G20359 Trifolium pratense HOM05D003216 ORTHO05D002268 6.0e-26 120.9 112 52.7
TPR.G17160 Trifolium pratense HOM05D003216 ORTHO05D002268 5.1e-25 117.9 111 50.5
TPR.G27562 Trifolium pratense HOM05D003216 ORTHO05D002268 5.1e-25 117.9 97 54.6
TPR.G32043 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-24 115.9 97 53.6
Medtr2g461120 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-24 115.5 107 50.5
TPR.G17632 Trifolium pratense HOM05D003216 ORTHO05D002268 2.5e-24 115.5 97 53.6
Medtr3g032550 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-24 115.2 105 50.5
Medtr8g040220 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-24 115.2 104 51.0
TPR.G40558 Trifolium pratense HOM05D003216 ORTHO05D002268 9.6e-24 113.6 108 49.1
Medtr1g051465 Medicago truncatula HOM05D003216 ORTHO05D002268 2.8e-23 112.1 106 49.1
Medtr7g006230 Medicago truncatula HOM05D003216 ORTHO05D002268 6.2e-23 110.9 107 48.6
Medtr5g062340 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-22 109.8 107 46.7
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-22 109.4 107 46.7
TPR.G16425 Trifolium pratense HOM05D003216 ORTHO05D002268 3.1e-22 108.6 96 51.0
Medtr3g437080 Medicago truncatula HOM05D003216 ORTHO05D002268 4.0e-22 108.2 86 54.7
Medtr1g016820 Medicago truncatula HOM05D003216 ORTHO05D002268 5.3e-22 107.8 107 45.8
Medtr3g014480 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-22 107.5 105 47.6
Medtr4g113170 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-21 106.7 104 46.2
Medtr8g017510 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-21 106.3 105 48.6
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 2.0e-21 105.9 60 76.7
Medtr4g132765 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-21 105.1 107 46.7
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-21 105.1 107 45.8
Medtr2g061890 Medicago truncatula HOM05D003216 ORTHO05D002268 4.5e-21 104.8 111 47.7
Medtr5g018790 Medicago truncatula HOM05D003216 ORTHO05D002268 4.5e-21 104.8 107 45.8
Medtr7g024793 Medicago truncatula HOM05D003216 ORTHO05D002268 4.5e-21 104.8 92 50.0
Medtr8g468040 Medicago truncatula HOM05D003216 ORTHO05D002268 5.8e-21 104.4 108 47.2
Medtr1g064700 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-21 104.0 107 45.8
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-21 104.0 107 45.8
TPR.G14047 Trifolium pratense HOM05D003216 ORTHO05D002268 1.3e-20 103.2 100 50.0
Medtr4g065057 Medicago truncatula HOM05D003216 ORTHO05D002268 2.9e-20 102.1 107 44.9
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 8.4e-20 100.5 107 44.9
TPR.G40026 Trifolium pratense HOM05D003216 ORTHO05D002268 8.4e-20 100.5 90 56.7
Medtr6g035400 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-18 95.9 106 43.4
Medtr6g084230 Medicago truncatula HOM05D003216 ORTHO05D002268 2.7e-18 95.5 107 44.9
TPR.G7282 Trifolium pratense HOM05D003216 ORTHO05D002268 3.5e-18 95.1 67 64.2
TPR.G754 Trifolium pratense HOM05D003216 ORTHO05D002268 4.6e-18 94.7 67 64.2
Medtr7g069450 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-17 91.3 89 46.1
TPR.G38697 Trifolium pratense HOM05D003216 ORTHO05D002268 8.7e-17 90.5 75 48.0
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 1.1e-16 90.1 76 48.7
Medtr5g039360 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-16 89.4 90 48.9
Medtr5g037560 Medicago truncatula HOM05D003216 ORTHO05D002268 7.4e-16 87.4 102 42.2
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 7.4e-16 87.4 104 41.3
TPR.G30425 Trifolium pratense HOM05D003216 ORTHO05D002268 7.4e-16 87.4 53 75.5
Medtr7g004990 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-15 86.7 99 44.4
TPR.G17165 Trifolium pratense HOM05D003216 ORTHO05D002268 2.8e-15 85.5 102 39.2
Medtr8g409330 Medicago truncatula HOM05D003216 ORTHO05D002268 6.3e-15 84.3 107 41.1
Medtr2g067680 Medicago truncatula HOM05D003216 ORTHO05D002268 8.2e-15 84.0 85 42.4
Medtr4g048540 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-14 82.8 90 43.3
Medtr7g056013 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-14 81.6 104 39.4
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 2.6e-13 79.0 103 38.8
Medtr8g463980 Medicago truncatula HOM05D003216 ORTHO05D002268 2.6e-13 79.0 104 35.6
Medtr5g032220 Medicago truncatula HOM05D000593 ORTHO05D000562 3.4e-13 78.6 104 39.4
Ca_01383_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 7.6e-13 77.4 96 39.6
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.3e-12 76.6 103 30.1
Medtr1g101180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-12 76.6 103 36.9
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.7e-12 76.3 101 32.7
Ca_14497_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.7e-12 76.3 102 33.3
Medtr3g087410 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-12 75.9 107 41.1
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.9e-12 75.5 96 39.6
CSS0016602 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.8e-12 75.1 104 34.6
TPR.G1696 Trifolium pratense HOM05D009380 ORTHO05D009933 3.8e-12 75.1 40 80.0
Medtr6g086765 Medicago truncatula HOM05D003216 ORTHO05D002268 5.0e-12 74.7 84 48.8
Medtr1g111720 Medicago truncatula HOM05D003216 ORTHO05D002268 6.5e-12 74.3 102 35.3
Medtr8g465330 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-11 73.6 104 34.6
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 1.4e-11 73.2 105 37.1
TWI73G0339 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.4e-11 73.2 100 38.0
TPR.G40224 Trifolium pratense HOM05D003216 ORTHO05D002268 2.5e-11 72.4 94 38.3
TPR.G17604 Trifolium pratense HOM05D003216 ORTHO05D002268 3.2e-11 72.0 50 62.0
Ca_05375_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 4.2e-11 71.6 97 37.1
Medtr3g463860 Medicago truncatula HOM05D003216 ORTHO05D002268 4.2e-11 71.6 104 35.6
Medtr3g104445 Medicago truncatula HOM05D003216 ORTHO05D002268 5.5e-11 71.2 86 38.4
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 9.4e-11 70.5 97 36.1
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 9.4e-11 70.5 97 36.1
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.2e-10 70.1 101 34.7
TPR.G30694 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-10 70.1 50 52.0
CSS0030203 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.6e-10 69.7 104 32.7
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.6e-10 69.7 102 34.3
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.1e-10 69.3 102 33.3
Ca_13826_v3 Cicer arietinum L. HOM05D000593 ORTHO05D004526 2.7e-10 68.9 90 37.8
CSS0037267 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.6e-10 68.6 101 34.7
Medtr2g461930 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-10 68.6 109 36.7
CSS0019902 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 4.6e-10 68.2 104 32.7
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 4.6e-10 68.2 99 32.3
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 1.0e-09 67.0 106 33.0
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 1.0e-09 67.0 106 33.0
Medtr2g436740 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-09 67.0 67 47.8
Aqoxy1G00859 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 1.4e-09 66.6 102 35.3
Aqoxy5G01684 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 1.4e-09 66.6 102 35.3
Medtr8g465250 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-09 66.6 56 44.6
TWI63G0793 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.4e-09 66.6 102 37.3
Rhsim01G0176400 Rhododendron simsii HOM05D003216 ORTHO05D002268 3.0e-09 65.5 103 33.0
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 3.0e-09 65.5 103 33.0
Medtr6g084295 Medicago truncatula HOM05D003216 ORTHO05D002268 3.9e-09 65.1 52 50.0
Medtr2g101530 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-09 64.7 55 45.5
CSS0009299 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 6.7e-09 64.3 101 33.7
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 8.8e-09 63.9 103 32.0
Aqoxy3G00378 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 8.8e-09 63.9 94 39.4
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 8.8e-09 63.9 94 38.3
Medtr7g095760 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-08 63.5 63 49.2
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.1e-08 63.5 102 30.4
TWI38G0345 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.1e-08 63.5 97 36.1
ECA240G3759 Erigeron canadensis HOM05D000593 ORTHO05D002268 1.5e-08 63.2 93 33.3
Medtr6g089230 Medicago truncatula HOM05D003216 ORTHO05D004526 1.5e-08 63.2 52 50.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.9e-08 62.8 99 31.3
Medtr2g067910 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-08 62.8 54 44.4
PSO210G1587 Papaver somniferum HOM05D003216 ORTHO05D002268 1.9e-08 62.8 104 31.7
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 2.5e-08 62.4 102 30.4
Atru.chr2.576 Acer truncatum HOM05D000593 ORTHO05D000562 3.3e-08 62.0 106 29.2
Atru.chr4.890 Acer truncatum HOM05D000593 ORTHO05D000562 5.7e-08 61.2 101 30.7
TWI74G1657 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 5.7e-08 61.2 96 33.3
HanXRQChr12g0378381 Helianthus annuus HOM05D000593 ORTHO05D002268 9.7e-08 60.5 104 32.7
Medtr1g024975 Medicago truncatula HOM05D003216 ORTHO05D002268 9.7e-08 60.5 54 38.9
Medtr4g015450 Medicago truncatula HOM05D003216 ORTHO05D010126 9.7e-08 60.5 55 54.5
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.3e-07 60.1 99 28.3
CSS0004654 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.7e-07 59.7 101 31.7
CSS0014323 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.7e-07 59.7 75 37.3
TPR.G22653 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-07 59.7 81 35.8
Medtr3g044770 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-07 59.3 58 48.3
TWI73G0826 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.8e-07 58.9 96 32.3
ECA247G1992 Erigeron canadensis HOM05D000710 ORTHO05D000336 3.7e-07 58.5 82 32.9
PSO339G0458 Papaver somniferum HOM05D000593 ORTHO05D002268 4.8e-07 58.2 104 30.8
CANSAT54G0060 Cannabis sativa HOM05D003216 ORTHO05D002268 6.3e-07 57.8 101 33.7
Atru.chr11.1014 Acer truncatum HOM05D000593 ORTHO05D000562 1.1e-06 57.0 110 31.8
HanXRQChr08g0215981 Helianthus annuus HOM05D000593 ORTHO05D002268 1.1e-06 57.0 104 27.9
CSS0013856 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.4e-06 56.6 97 32.0
Medtr8g463970 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-06 56.6 44 63.6
TWI75G0109 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 1.4e-06 56.6 90 33.3
Atru.chr1.3004 Acer truncatum HOM05D000593 ORTHO05D002268 1.8e-06 56.2 110 30.9
Medtr4g050580 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-06 55.5 42 59.5
Medtr7g024450 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-06 55.5 56 37.5
Aqoxy1G03120 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 5.3e-06 54.7 95 32.6
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 5.3e-06 54.7 99 29.3
Medtr2g026620 Medicago truncatula HOM05D003216 ORTHO05D002268 5.3e-06 54.7 44 61.4
CANSAT01G1396 Cannabis sativa HOM05D000593 ORTHO05D000562 6.9e-06 54.3 75 40.0
HanXRQChr05g0151291 Helianthus annuus HOM05D000593 ORTHO05D000562 6.9e-06 54.3 100 30.0


User provided reference genes

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