Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22804 Trifolium pratense HOM05D001921 ORTHO05D001784 3.9e-78 294.7 143 100.0
Ca_03892_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.0e-38 161.8 139 64.7
Medtr2g461300 Medicago truncatula HOM05D001921 ORTHO05D001784 2.4e-35 152.5 142 62.7
Psat1g022640 Pisum sativum HOM05D001921 ORTHO05D001784 5.9e-34 147.9 143 60.1
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 4.4e-21 105.1 128 49.2
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 1.3e-20 103.6 122 50.0
Lj6g0019201 Lotus japonicus HOM05D001921 ORTHO05D001784 4.9e-20 101.7 104 53.8
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 8.3e-20 100.9 136 47.1
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 5.4e-19 98.2 135 46.7
Ca_21607_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.2e-18 97.1 116 49.1
COL.COLO4_18732 Corchorus olitorius HOM05D001921 ORTHO05D001784 1.2e-18 97.1 146 43.8
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 1.6e-18 96.7 108 50.9
TWI34G0586 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 3.9e-17 92.0 126 46.8
Gohir.A06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.6e-17 91.3 146 43.2
Gohir.D06G096000 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.6e-17 91.3 146 44.5
Duzib187G0406 Durio zibethinus HOM05D001921 ORTHO05D001784 1.1e-16 90.5 142 43.7
Gorai.010G110700 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.1e-16 90.5 146 43.8
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 5.6e-16 88.2 148 43.9
TPR.G15777 Trifolium pratense HOM05D001921 ORTHO05D001784 9.5e-16 87.4 111 48.6
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 1.2e-15 87.0 152 43.4
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 2.1e-15 86.3 140 42.9
Lalb_Chr11g0072831 Lupinus albus HOM05D001921 ORTHO05D001784 2.1e-15 86.3 111 49.5
Glyma.13G156700 Glycine max HOM05D001921 ORTHO05D001784 3.6e-15 85.5 153 41.2
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 4.7e-15 85.1 139 43.2
DCAR_017895 Daucus carota HOM05D001921 ORTHO05D001784 6.2e-15 84.7 95 54.7
Gohir.A06G095800 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.1e-15 84.3 120 44.2
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 8.1e-15 84.3 94 52.1
Gohir.D06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.1e-14 84.0 119 44.5
Gorai.010G110500 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.4e-14 83.6 128 43.8
CiPaw.15G179300 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.8e-14 81.3 144 39.6
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 6.8e-14 81.3 129 47.3
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 6.8e-14 81.3 129 47.3
Dinv03420 Davidia involucrata HOM05D001921 ORTHO05D001784 3.4e-13 79.0 137 40.1
MD15G1158100 Malus domestica HOM05D001921 ORTHO05D001784 4.4e-13 78.6 159 42.1
Thecc.09G037400 Theobroma cacao HOM05D001921 ORTHO05D001784 4.4e-13 78.6 138 43.5
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 5.8e-13 78.2 128 46.1
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 5.8e-13 78.2 138 43.5
Medtr4g116830 Medicago truncatula HOM05D001921 ORTHO05D001784 7.5e-13 77.8 156 37.8
Prupe.7G253300 Prunus persica HOM05D001921 ORTHO05D001784 9.9e-13 77.4 132 41.7
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 1.3e-12 77.0 132 43.9
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 1.3e-12 77.0 141 41.8
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 1.3e-12 77.0 140 40.7
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 1.7e-12 76.6 138 43.5
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.7e-12 76.6 138 43.5
EL10Ac6g15007 Beta vulgaris HOM05D001921 ORTHO05D001784 2.2e-12 76.3 130 41.5
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 2.2e-12 76.3 114 45.6
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 2.2e-12 76.3 114 45.6
RcHm_v2.0_Chr2g0086511 Rosa chinensis HOM05D001921 ORTHO05D001784 2.2e-12 76.3 131 43.5
BcaB01g02085 Brassica carinata HOM05D001921 ORTHO05D001784 2.9e-12 75.9 143 39.9
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.9e-12 75.9 137 43.1
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 2.9e-12 75.9 130 40.8
Sc14g0000060 Simmondsia chinensis HOM05D001921 ORTHO05D001784 3.7e-12 75.5 119 43.7
Actinidia38704 Actinidia chinensis HOM05D001921 ORTHO05D001784 8.3e-12 74.3 138 41.3
FAN28G2602 Fragaria x ananassa HOM05D001921 ORTHO05D001784 8.3e-12 74.3 138 43.5
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 1.4e-11 73.6 134 43.3
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.4e-11 73.6 101 44.6
Lalb_Chr07g0179601 Lupinus albus HOM05D001921 ORTHO05D001784 1.9e-11 73.2 134 40.3
Sed0017709 Sechium edule HOM05D001921 ORTHO05D001784 1.9e-11 73.2 129 39.5
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.4e-11 72.8 134 38.1
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.4e-11 72.8 91 51.6
CsaV3_2G003470 Cucumis sativus L. HOM05D001921 ORTHO05D001784 3.2e-11 72.4 96 46.9
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.2e-11 72.4 136 42.6
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 3.2e-11 72.4 122 45.1
MELO3C004451.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.1e-11 72.0 155 37.4
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 7.1e-11 71.2 128 39.8
CiPaw.16G117000 Carya illinoinensis HOM05D001921 ORTHO05D001784 9.2e-11 70.9 120 41.7
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 9.2e-11 70.9 138 40.6
Sp6g01920 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.6e-10 70.1 134 40.3
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.6e-10 70.1 142 38.7
ClCG11G003650 Citrullus lanatus HOM05D001921 ORTHO05D001784 3.5e-10 68.9 156 34.0
Thhalv10029029m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 3.5e-10 68.9 143 35.0
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.5e-10 68.9 99 44.4
PGR102G2943 Punica granatum HOM05D001921 ORTHO05D001784 3.5e-10 68.9 90 47.8
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 7.8e-10 67.8 89 43.8
CARHR249650 Cardamine hirsuta HOM05D001921 ORTHO05D001784 7.8e-10 67.8 160 36.2
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 7.8e-10 67.8 120 40.0
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 1.0e-09 67.4 133 41.4
A01p06280 Brassica napus HOM05D001921 ORTHO05D001784 1.3e-09 67.0 98 42.9
Haze_21453 Corylus avellana HOM05D001921 ORTHO05D001784 1.3e-09 67.0 131 39.7
BolC9t53094H Brassica oleracea HOM05D001921 ORTHO05D001784 1.7e-09 66.6 146 37.7
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 1.7e-09 66.6 94 43.6
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.3e-09 66.2 129 36.4
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.3e-09 66.2 99 43.4
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.3e-09 66.2 94 43.6
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 3.0e-09 65.9 86 47.7
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.9e-09 65.5 96 42.7
THA.LOC104803850 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 3.9e-09 65.5 84 45.2
BcaC04g24030 Brassica carinata HOM05D001921 ORTHO05D001784 5.1e-09 65.1 152 36.8
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.1e-09 65.1 122 37.7
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.1e-09 65.1 142 37.3
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 5.1e-09 65.1 93 40.9
Actinidia23087 Actinidia chinensis HOM05D001921 ORTHO05D001784 6.6e-09 64.7 89 48.3
A09p01490 Brassica napus HOM05D001921 ORTHO05D001784 6.6e-09 64.7 131 38.2
BraA09t35810Z Brassica rapa HOM05D001921 ORTHO05D001784 6.6e-09 64.7 131 38.2
Sp7g29820 Schrenkiella parvula HOM05D001921 ORTHO05D001784 6.6e-09 64.7 91 41.8
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.6e-09 64.7 85 48.2
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 6.6e-09 64.7 131 37.4
C09p01610 Brassica napus HOM05D001921 ORTHO05D001784 8.6e-09 64.3 146 37.0
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 1.5e-08 63.5 118 38.1
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.5e-08 63.5 93 41.9
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.5e-08 63.5 131 38.2
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.5e-08 63.5 129 36.4
Potri.006G260000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.5e-08 63.5 90 44.4
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 1.5e-08 63.5 130 34.6
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 1.5e-08 63.5 79 48.1
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.5e-08 63.5 84 45.2
Haze_21460 Corylus avellana HOM05D001921 ORTHO05D001784 1.9e-08 63.2 127 33.9
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.9e-08 63.2 142 35.2
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.9e-08 63.2 142 35.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.9e-08 63.2 147 33.3
BcaB01g02407 Brassica carinata HOM05D001921 ORTHO05D001784 2.5e-08 62.8 80 46.2
BcaB01g02410 Brassica carinata HOM05D001921 ORTHO05D001784 2.5e-08 62.8 80 46.2
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.5e-08 62.8 142 35.2
Phvul.009G208700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.5e-08 62.8 114 41.2
PGSC0003DMG400029898 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.5e-08 62.8 80 50.0
AUR62011266 Chenopodium quinoa HOM05D001921 ORTHO05D001784 3.3e-08 62.4 129 38.0
Haze_21461 Corylus avellana HOM05D001921 ORTHO05D001784 3.3e-08 62.4 125 36.0
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 3.3e-08 62.4 134 36.6
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.3e-08 62.0 129 35.7
AL6G51210 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 5.6e-08 61.6 158 35.4
AT4G02040 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 5.6e-08 61.6 154 35.7
BcaB01g02086 Brassica carinata HOM05D001921 ORTHO05D001784 5.6e-08 61.6 95 43.2
MD15G1131400 Malus domestica HOM05D001921 ORTHO05D001784 5.6e-08 61.6 156 33.3
C07p59050 Brassica napus HOM05D001921 ORTHO05D001784 7.3e-08 61.2 139 34.5
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 7.3e-08 61.2 94 40.4
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 7.3e-08 61.2 131 39.7
AUR62041439 Chenopodium quinoa HOM05D001921 ORTHO05D001784 7.3e-08 61.2 132 36.4
AUR62042019 Chenopodium quinoa HOM05D001921 ORTHO05D001784 7.3e-08 61.2 132 36.4
AUR62043765 Chenopodium quinoa HOM05D001921 ORTHO05D001784 7.3e-08 61.2 132 36.4
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 7.3e-08 61.2 131 35.1
TAR625G0682 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.3e-08 61.2 146 37.7
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 9.5e-08 60.8 94 45.7
Ah.02g128550 Amaranthus hybridus HOM05D000544 ORTHO05D001784 1.2e-07 60.5 124 34.7
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.2e-07 60.5 118 36.4
BolC3t16100H Brassica oleracea HOM05D001921 ORTHO05D001784 1.6e-07 60.1 147 34.7
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.6e-07 60.1 93 39.8
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 2.1e-07 59.7 141 35.5
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.1e-07 59.7 132 35.6
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 2.8e-07 59.3 77 44.2
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 2.8e-07 59.3 77 44.2
AT4G32020 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 3.6e-07 58.9 90 38.9
BcaC01g06781 Brassica carinata HOM05D001921 ORTHO05D001784 3.6e-07 58.9 147 34.0
C03p38190 Brassica napus HOM05D001921 ORTHO05D001784 3.6e-07 58.9 147 34.0
CANSAT11G0699 Cannabis sativa HOM05D001921 ORTHO05D001784 3.6e-07 58.9 145 33.1
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 3.6e-07 58.9 130 36.9
A03p31290 Brassica napus HOM05D001921 ORTHO05D001784 4.7e-07 58.5 147 34.7
BolC1t00688H Brassica oleracea HOM05D001921 ORTHO05D001784 4.7e-07 58.5 104 34.6
Carub.0006s3519 Capsella rubella HOM05D001921 ORTHO05D001784 4.7e-07 58.5 157 35.0
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 4.7e-07 58.5 130 36.9
TAR625G1323 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.7e-07 58.5 148 36.5
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.2e-07 58.2 132 35.6
THA.LOC104818602 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 6.2e-07 58.2 81 40.7
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 8.1e-07 57.8 150 33.3
BraA03t12309Z Brassica rapa HOM05D001921 ORTHO05D001784 8.1e-07 57.8 147 34.7
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 8.1e-07 57.8 84 42.9
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 8.1e-07 57.8 149 36.2
Carub.0007s0853 Capsella rubella HOM05D001921 ORTHO05D001784 1.1e-06 57.4 107 36.4
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.1e-06 57.4 84 40.5
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 1.1e-06 57.4 84 42.9
VMungo1309G0884 Vigna mungo HOM05D001921 ORTHO05D001784 1.1e-06 57.4 93 44.1
BraA01t00594Z Brassica rapa HOM05D001921 ORTHO05D001784 1.4e-06 57.0 111 32.4
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.4e-06 57.0 90 41.1
Eucgr.C04063 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.4e-06 57.0 52 57.7
Glyma.15G203400 Glycine max HOM05D001921 ORTHO05D001784 1.4e-06 57.0 91 48.4
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 1.4e-06 57.0 126 35.7
Lalb_Chr12g0198531 Lupinus albus HOM05D001921 ORTHO05D001784 1.8e-06 56.6 94 39.4
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.8e-06 56.6 101 40.6
BcaC09g51990 Brassica carinata HOM05D001921 ORTHO05D001784 2.4e-06 56.2 111 32.4
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 2.4e-06 56.2 135 34.1
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 2.4e-06 56.2 135 33.3
Thhalv10026353m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 2.4e-06 56.2 142 31.7
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.1e-06 55.8 91 41.8
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.1e-06 55.8 91 41.8
Sed0019454 Sechium edule HOM05D001921 ORTHO05D001784 3.1e-06 55.8 138 35.5
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.1e-06 55.8 139 35.3
C01p06910 Brassica napus HOM05D001921 ORTHO05D001784 4.0e-06 55.5 111 32.4
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 4.0e-06 55.5 85 42.4
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 4.0e-06 55.5 83 42.2
BolC7t46353H Brassica oleracea HOM05D001921 ORTHO05D001784 5.2e-06 55.1 142 32.4
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.2e-06 55.1 98 38.8
THA.LOC104826571 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 5.2e-06 55.1 154 32.5
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 8.9e-06 54.3 75 41.3
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 8.9e-06 54.3 86 37.2


User provided reference genes

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