Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22718 Trifolium pratense HOM05D003216 ORTHO05D002268 8.4e-99 363.6 175 100.0
TPR.G28022 Trifolium pratense HOM05D003216 ORTHO05D002268 3.0e-88 328.6 170 95.3
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 4.7e-73 278.1 169 76.3
TPR.G9575 Trifolium pratense HOM05D003216 ORTHO05D009933 5.1e-72 274.6 171 78.9
TPR.G31202 Trifolium pratense HOM05D009380 ORTHO05D009933 3.5e-68 261.9 170 72.4
TPR.G14425 Trifolium pratense HOM05D003216 ORTHO05D002268 6.5e-67 257.7 170 71.2
TPR.G35306 Trifolium pratense HOM05D003216 ORTHO05D002268 2.5e-66 255.8 170 69.4
TPR.G8192 Trifolium pratense HOM05D003216 ORTHO05D002268 1.6e-60 236.5 152 70.4
TPR.G25329 Trifolium pratense HOM05D009380 ORTHO05D009933 6.1e-57 224.6 135 74.8
TPR.G31505 Trifolium pratense HOM05D003216 ORTHO05D002268 6.8e-56 221.1 158 65.8
TPR.G20309 Trifolium pratense HOM05D003216 ORTHO05D002268 4.4e-55 218.4 133 78.2
TPR.G36380 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-54 216.5 170 58.8
TPR.G22805 Trifolium pratense HOM05D003216 ORTHO05D002268 2.7e-52 209.1 107 92.5
TPR.G38871 Trifolium pratense HOM05D003216 ORTHO05D002268 2.2e-51 206.1 120 81.7
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-36 156.8 170 50.0
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 3.5e-36 155.6 105 67.6
TPR.G28459 Trifolium pratense HOM05D003216 ORTHO05D002268 1.0e-35 154.1 171 45.6
TPR.G8656 Trifolium pratense HOM05D003216 ORTHO05D002268 1.0e-32 144.1 164 43.9
TPR.G14065 Trifolium pratense HOM05D003216 ORTHO05D002268 2.3e-32 142.9 174 44.8
Medtr2g461120 Medicago truncatula HOM05D003216 ORTHO05D002268 6.8e-32 141.4 147 47.6
TPR.G22845 Trifolium pratense HOM05D003216 ORTHO05D002268 8.9e-32 141.0 164 43.3
TPR.G17160 Trifolium pratense HOM05D003216 ORTHO05D002268 5.8e-31 138.3 173 42.2
TPR.G30425 Trifolium pratense HOM05D003216 ORTHO05D002268 3.7e-30 135.6 93 69.9
TPR.G20359 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-29 133.3 149 46.3
Medtr1g051465 Medicago truncatula HOM05D003216 ORTHO05D002268 3.2e-29 132.5 154 44.8
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-29 132.1 155 43.9
Medtr5g062340 Medicago truncatula HOM05D003216 ORTHO05D002268 9.2e-29 131.0 178 40.4
Medtr3g032550 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-28 130.6 174 40.2
Medtr7g006230 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-28 130.6 178 41.0
TPR.G40729 Trifolium pratense HOM05D003216 ORTHO05D002268 2.7e-28 129.4 132 50.0
Medtr3g014480 Medicago truncatula HOM05D003216 ORTHO05D002268 3.5e-28 129.0 174 39.1
TPR.G40558 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-27 126.7 165 41.2
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 2.3e-27 126.3 178 39.9
Medtr1g016820 Medicago truncatula HOM05D003216 ORTHO05D002268 3.0e-27 125.9 178 39.9
Medtr5g018790 Medicago truncatula HOM05D003216 ORTHO05D002268 3.0e-27 125.9 178 39.9
TPR.G1696 Trifolium pratense HOM05D009380 ORTHO05D009933 3.0e-27 125.9 85 65.9
Medtr3g437080 Medicago truncatula HOM05D003216 ORTHO05D002268 8.6e-27 124.4 135 45.9
Medtr8g017510 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-26 122.9 172 41.9
Medtr2g061890 Medicago truncatula HOM05D003216 ORTHO05D002268 4.3e-26 122.1 170 41.8
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 7.3e-26 121.3 155 41.9
TPR.G17604 Trifolium pratense HOM05D003216 ORTHO05D002268 9.5e-26 120.9 90 62.2
Medtr4g113170 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-25 120.2 153 41.2
Medtr4g132765 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-25 119.8 172 40.7
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-25 119.0 155 41.3
Medtr8g468040 Medicago truncatula HOM05D003216 ORTHO05D002268 4.7e-25 118.6 155 41.3
TPR.G27562 Trifolium pratense HOM05D003216 ORTHO05D002268 2.3e-24 116.3 117 47.9
Medtr8g040220 Medicago truncatula HOM05D003216 ORTHO05D002268 6.8e-24 114.8 151 41.1
TPR.G32043 Trifolium pratense HOM05D003216 ORTHO05D002268 8.9e-24 114.4 117 47.0
TPR.G17632 Trifolium pratense HOM05D003216 ORTHO05D002268 1.5e-23 113.6 117 47.9
Medtr6g084230 Medicago truncatula HOM05D003216 ORTHO05D002268 7.5e-23 111.3 167 40.1
Medtr6g035400 Medicago truncatula HOM05D003216 ORTHO05D002268 9.8e-23 110.9 172 38.4
TPR.G754 Trifolium pratense HOM05D003216 ORTHO05D002268 4.9e-22 108.6 108 50.0
TPR.G7282 Trifolium pratense HOM05D003216 ORTHO05D002268 8.3e-22 107.8 108 49.1
Medtr5g037560 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-21 107.5 147 40.1
TPR.G16425 Trifolium pratense HOM05D003216 ORTHO05D002268 1.4e-21 107.1 116 44.8
Medtr4g048540 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-20 103.6 138 40.6
TPR.G40026 Trifolium pratense HOM05D003216 ORTHO05D002268 4.6e-20 102.1 93 53.8
Medtr1g064700 Medicago truncatula HOM05D003216 ORTHO05D002268 7.8e-20 101.3 137 40.9
TPR.G17165 Trifolium pratense HOM05D003216 ORTHO05D002268 7.8e-20 101.3 167 33.5
Medtr5g039360 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-19 100.9 130 42.3
Medtr4g065057 Medicago truncatula HOM05D003216 ORTHO05D002268 2.3e-19 99.8 137 40.1
Medtr8g409330 Medicago truncatula HOM05D003216 ORTHO05D002268 3.9e-19 99.0 173 36.4
Medtr8g463980 Medicago truncatula HOM05D003216 ORTHO05D002268 6.6e-19 98.2 175 33.1
TPR.G14047 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-18 96.7 125 44.8
Medtr7g024793 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-18 95.9 114 43.0
Medtr2g461930 Medicago truncatula HOM05D003216 ORTHO05D002268 4.3e-18 95.5 154 36.4
Medtr7g056013 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-17 93.6 169 35.5
Medtr1g101180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-16 90.9 162 33.3
Medtr7g069450 Medicago truncatula HOM05D003216 ORTHO05D002268 8.9e-16 87.8 171 32.2
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 1.2e-15 87.4 147 34.0
Medtr3g087410 Medicago truncatula HOM05D003216 ORTHO05D002268 2.6e-15 86.3 172 35.5
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 4.4e-15 85.5 116 38.8
Medtr7g004990 Medicago truncatula HOM05D003216 ORTHO05D002268 9.9e-15 84.3 106 42.5
TPR.G38697 Trifolium pratense HOM05D003216 ORTHO05D002268 9.9e-15 84.3 75 46.7
Medtr2g436740 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-14 83.6 107 41.1
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 3.7e-14 82.4 162 32.7
Medtr4g015450 Medicago truncatula HOM05D003216 ORTHO05D010126 8.4e-14 81.3 104 42.3
Medtr6g086765 Medicago truncatula HOM05D003216 ORTHO05D002268 8.4e-14 81.3 124 41.9
Medtr7g095760 Medicago truncatula HOM05D003216 ORTHO05D002268 3.2e-13 79.3 173 34.7
Medtr2g026620 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-13 79.0 92 48.9
Ca_01383_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 5.4e-13 78.6 143 31.5
Medtr2g067680 Medicago truncatula HOM05D003216 ORTHO05D002268 5.4e-13 78.6 108 36.1
Medtr8g463970 Medicago truncatula HOM05D003216 ORTHO05D002268 5.4e-13 78.6 92 47.8
TPR.G40224 Trifolium pratense HOM05D003216 ORTHO05D002268 9.2e-13 77.8 135 33.3
CSS0016602 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.6e-12 77.0 150 30.7
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 2.7e-12 76.3 154 27.3
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 4.6e-12 75.5 137 34.3
Medtr3g044770 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-11 74.3 98 41.8
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 1.3e-11 73.9 155 32.9
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 1.3e-11 73.9 155 32.9
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 3.0e-11 72.8 147 29.3
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 3.0e-11 72.8 141 31.2
TPR.G30694 Trifolium pratense HOM05D003216 ORTHO05D002268 3.0e-11 72.8 70 42.9
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 5.1e-11 72.0 150 28.7
Aqoxy1G00859 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 8.6e-11 71.2 148 32.4
Aqoxy5G01684 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 8.6e-11 71.2 148 32.4
Medtr8g465330 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-10 69.3 128 31.2
Medtr1g089160 Medicago truncatula HOM05D003216 ORTHO05D002268 4.3e-10 68.9 87 42.5
Ca_14497_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 5.6e-10 68.6 102 32.4
Medtr6g004370 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-09 66.6 63 52.4
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 2.8e-09 66.2 147 28.6
Medtr5g032220 Medicago truncatula HOM05D000593 ORTHO05D000562 2.8e-09 66.2 105 34.3
Medtr1g111720 Medicago truncatula HOM05D003216 ORTHO05D002268 4.7e-09 65.5 124 32.3
TWI63G0793 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.7e-09 65.5 102 36.3
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 8.1e-09 64.7 147 27.9
TPR.G1751 Trifolium pratense HOM05D003216 ORTHO05D002268 8.1e-09 64.7 46 63.0
Medtr5g006100 Medicago truncatula HOM05D003216 ORTHO05D004526 1.1e-08 64.3 87 43.7
TWI73G0339 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.1e-08 64.3 120 33.3
ECA240G3759 Erigeron canadensis HOM05D000593 ORTHO05D002268 1.4e-08 63.9 141 29.8
Medtr1g015680 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-08 63.5 64 50.0
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 1.8e-08 63.5 102 36.3
Medtr4g050580 Medicago truncatula HOM05D003216 ORTHO05D002268 2.4e-08 63.2 91 39.6
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 3.1e-08 62.8 147 27.2
MD05G1031400 Malus domestica HOM05D000593 ORTHO05D000562 3.1e-08 62.8 147 27.9
Medtr3g088695 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-08 62.8 79 45.6
Medtr7g033500 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-08 62.8 76 43.4
Rhsim01G0176400 Rhododendron simsii HOM05D003216 ORTHO05D002268 3.1e-08 62.8 107 32.7
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 3.1e-08 62.8 107 32.7
Ca_05375_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 4.0e-08 62.4 97 36.1
Ca_13826_v3 Cicer arietinum L. HOM05D000593 ORTHO05D004526 4.0e-08 62.4 90 36.7
Medtr5g017770 Medicago truncatula HOM05D003216 ORTHO05D002268 5.2e-08 62.0 87 41.4
Medtr6g059570 Medicago truncatula HOM05D003216 ORTHO05D002268 6.8e-08 61.6 65 46.2
Medtr6g084295 Medicago truncatula HOM05D003216 ORTHO05D002268 6.8e-08 61.6 52 50.0
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 8.9e-08 61.2 101 34.7
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 8.9e-08 61.2 101 34.7
Medtr2g034775 Medicago truncatula HOM05D003216 ORTHO05D002268 8.9e-08 61.2 91 39.6
Aqoxy3G00378 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 1.2e-07 60.8 138 31.9
CANSAT54G0060 Cannabis sativa HOM05D003216 ORTHO05D002268 1.2e-07 60.8 161 29.8
Medtr3g072200 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-07 60.8 86 40.7
Medtr7g055617 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-07 60.5 82 40.2
Medtr1g103800 Medicago truncatula HOM05D003216 ORTHO05D002268 2.0e-07 60.1 75 42.7
FvH4_5g20623 Fragaria vesca HOM05D000593 ORTHO05D000562 2.6e-07 59.7 171 25.7
ECA247G1992 Erigeron canadensis HOM05D000710 ORTHO05D000336 4.4e-07 58.9 130 29.2
Medtr3g104445 Medicago truncatula HOM05D003216 ORTHO05D002268 4.4e-07 58.9 86 36.0
CANSAT01G1396 Cannabis sativa HOM05D000593 ORTHO05D000562 5.8e-07 58.5 121 34.7
Medtr2g101530 Medicago truncatula HOM05D003216 ORTHO05D002268 5.8e-07 58.5 53 45.3
HanXRQChr12g0378381 Helianthus annuus HOM05D000593 ORTHO05D002268 9.9e-07 57.8 112 33.0
Medtr5g413325 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-06 57.4 71 42.3
Medtr6g089230 Medicago truncatula HOM05D003216 ORTHO05D004526 1.3e-06 57.4 52 48.1
Medtr2g067910 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-06 56.6 52 44.2
Medtr5g071980 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-06 56.6 74 39.2
Medtr8g465250 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-06 55.1 56 39.3


User provided reference genes

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