Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 2876.7 1529 100.0
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 2486.1 1536 84.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 2467.6 1534 84.6
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 2462.2 1538 84.5
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 2301.2 1534 79.1
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 2264.2 1528 77.6
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 2254.9 1541 78.3
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2120.9 1575 72.3
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2113.2 1575 72.0
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1889.4 1336 75.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1796.2 1536 64.8
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1790.0 1538 64.3
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1789.2 1564 63.3
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1753.0 1540 62.7
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1750.7 1540 62.4
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1735.7 1548 62.1
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1731.8 1534 62.0
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1731.8 1555 62.1
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1724.9 1538 62.5
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1712.2 1537 61.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1709.5 1545 61.2
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1701.0 1544 60.9
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1701.0 1544 60.9
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1700.3 1543 62.0
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1696.0 1540 61.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1690.2 1548 61.1
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1665.6 1540 58.8
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1657.9 1562 60.0
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1644.4 1567 58.9
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1637.1 1539 59.1
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1625.1 1542 58.4
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1615.1 1544 58.5
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1611.3 1548 58.1
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1610.5 1557 57.5
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1604.3 1544 58.8
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1584.7 1523 58.8
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1580.8 1540 57.2
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1565.8 1557 57.2
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1545.8 1591 57.5
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1510.7 1540 55.7
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1508.0 1540 55.2
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1493.0 1543 56.5
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1491.5 1569 54.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1489.2 1549 56.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1482.6 1547 55.7
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1475.7 1567 54.4
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1473.8 1574 55.5
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1462.2 1536 54.9
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1461.0 1533 54.6
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1459.5 1543 54.7
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1458.0 1530 54.6
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1451.0 1565 54.2
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1449.9 1514 54.6
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1447.6 1577 53.5
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1439.5 1613 52.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1436.8 1548 53.4
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1434.9 1565 53.6
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1434.1 1446 57.2
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1429.8 1579 53.5
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1429.8 1347 60.1
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1426.0 1334 60.3
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1412.1 1546 53.3
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1407.9 1457 55.3
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1405.2 1531 52.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1389.0 1535 52.8
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1387.9 1535 52.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1379.8 1537 53.0
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1379.8 1118 68.6
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1377.1 1488 53.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1366.7 1576 52.3
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1361.7 1530 53.4
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1361.7 1531 52.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1359.7 1544 51.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1356.7 1552 51.8
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1356.3 1538 52.5
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1335.5 1528 50.9
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1335.1 1527 50.9
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1332.0 1526 50.8
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1320.8 1525 50.6
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1320.4 1525 50.6
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1318.5 1527 50.3
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1272.7 1469 49.9
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1262.3 1538 50.5
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1260.4 1538 47.5
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1256.1 1535 49.1
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1254.2 1537 48.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1232.6 1397 52.2
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1192.2 1183 58.4
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1153.3 1155 58.4
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1134.4 1385 50.4
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1112.1 1422 46.8
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1110.9 1179 54.4
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1101.7 1242 51.8
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1088.6 1216 52.6
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1083.9 998 60.4
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 7.5e-284 981.5 1410 43.8
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.4e-243 845.5 1619 38.1
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.1e-240 835.9 1580 38.5
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 3.6e-238 829.7 1598 37.3
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.9e-234 817.4 1089 47.1
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 2.8e-222 776.9 1030 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 4.6e-217 759.6 1609 35.4
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.3e-206 724.9 528 70.6
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 8.7e-200 702.2 428 81.8
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 8.8e-192 675.6 906 45.4
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 7.0e-157 559.7 679 51.4
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 6.1e-153 546.6 1999 28.6
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 3.4e-143 514.2 584 52.4
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 7.8e-140 503.1 931 39.7
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 3.4e-135 487.6 603 49.4
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 6.8e-128 463.4 445 59.3
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 5.8e-127 460.3 432 58.8
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 6.4e-102 377.1 1426 27.3
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.0e-91 343.2 228 74.1
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 1.4e-80 306.2 343 49.9
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 4.6e-76 291.2 266 58.6
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 5.5e-69 267.7 385 46.2
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.2e-65 255.8 260 55.4
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.8e-64 252.7 571 34.9
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 7.2e-45 187.6 103 91.3
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.2e-41 176.0 162 61.7
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.8e-33 149.1 664 27.0
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.9e-25 122.5 87 69.0
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 3.7e-25 122.1 93 63.4
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 6.4e-25 121.3 91 69.2
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.8e-19 103.2 71 64.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 8.3e-17 94.4 78 59.0
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.7e-14 86.7 103 49.5
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 5.1e-14 85.1 85 56.5
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-13 84.0 87 51.7
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.1e-12 79.7 77 51.9
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 4.4e-10 72.0 54 64.8
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 7.1e-08 64.7 102 45.1
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 7.8e-07 61.2 68 51.5
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 2.3e-06 59.7 53 52.8
Zm00001eb324780 Zea mays HOM05D005760 ORTHO05D000367 5.1e-06 58.5 55 54.5


User provided reference genes

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