Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 7.2e-58 227.3 134 100.0
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 4.0e-40 168.3 144 68.8
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 2.3e-27 125.9 70 90.0
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 5.0e-27 124.8 134 71.6
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 9.5e-26 120.6 134 61.2
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.6e-25 119.8 142 63.4
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 2.1e-25 119.4 127 62.2
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 3.6e-25 118.6 141 55.3
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 4.1e-21 105.1 139 51.1
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.7e-19 99.8 133 48.1
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.7e-19 99.8 133 48.1
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.9e-18 96.3 128 47.7
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 9.5e-18 94.0 120 50.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.6e-17 93.2 137 51.8
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 3.6e-17 92.0 132 46.2
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 8.1e-17 90.9 84 61.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.3e-16 89.4 144 45.1
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.1e-16 89.0 130 45.4
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.9e-16 87.4 132 43.9
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 8.9e-16 87.4 130 45.4
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.2e-15 87.0 122 47.5
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.2e-15 87.0 145 42.8
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.0e-15 86.3 132 47.0
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.6e-15 85.9 130 44.6
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.4e-15 85.5 125 52.8
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 4.4e-15 85.1 82 62.2
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.9e-15 84.0 131 46.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.3e-14 83.6 131 40.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.3e-14 83.6 146 41.8
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-14 83.2 131 43.5
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.9e-14 82.4 144 50.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.9e-14 82.4 144 50.7
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.9e-14 82.4 144 50.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.9e-14 82.4 131 45.0
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 3.7e-14 82.0 131 47.3
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.7e-14 82.0 131 46.6
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.7e-14 82.0 128 47.7
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.9e-14 81.6 131 45.8
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.9e-14 81.6 131 45.8
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.9e-14 81.6 131 45.8
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 4.9e-14 81.6 144 46.5
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 4.9e-14 81.6 127 41.7
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 8.4e-14 80.9 129 42.6
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 8.4e-14 80.9 141 50.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.1e-13 80.5 140 41.4
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.4e-13 80.1 135 40.0
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.4e-13 80.1 138 50.7
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.4e-13 80.1 130 49.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-13 79.3 148 46.6
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.4e-13 79.3 137 47.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.4e-13 79.3 128 43.8
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.4e-13 79.3 79 51.9
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 3.2e-13 79.0 144 45.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.2e-13 79.0 143 49.0
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.2e-13 79.0 89 58.4
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 4.1e-13 78.6 138 41.3
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 4.1e-13 78.6 127 40.9
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 4.1e-13 78.6 127 40.9
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 5.4e-13 78.2 149 49.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 5.4e-13 78.2 77 57.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.1e-13 77.8 124 43.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 7.1e-13 77.8 144 46.5
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.1e-12 76.3 123 50.4
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.7e-12 75.9 74 55.4
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.5e-12 75.5 125 43.2
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.5e-12 75.5 134 49.3
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.6e-12 75.1 133 46.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.6e-12 75.1 136 52.9
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.0e-12 74.7 147 40.1
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 6.0e-12 74.7 124 47.6
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 6.0e-12 74.7 144 50.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 6.0e-12 74.7 73 58.9
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.8e-12 74.3 83 51.8
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.0e-11 73.9 128 39.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.7e-11 73.2 143 53.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.7e-11 73.2 133 41.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.7e-11 73.2 142 47.9
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.7e-11 73.2 139 41.7
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.3e-11 72.8 146 44.5
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.3e-11 72.8 140 40.0
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.3e-11 72.8 109 41.3
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.3e-11 72.8 129 39.5
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.0e-11 72.4 147 40.1
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 3.9e-11 72.0 142 42.3
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 5.1e-11 71.6 127 40.9
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.6e-11 70.9 75 56.0
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 8.6e-11 70.9 95 49.5
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 8.6e-11 70.9 79 50.6
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 8.6e-11 70.9 73 56.2
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 8.6e-11 70.9 89 52.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 8.6e-11 70.9 89 52.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 8.6e-11 70.9 83 49.4
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.1e-10 70.5 122 40.2
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.1e-10 70.5 143 39.9
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.1e-10 70.5 138 38.4
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-10 70.5 128 43.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.5e-10 70.1 136 36.8
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.5e-10 70.1 78 48.7
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-10 69.7 91 50.5
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-10 69.3 133 40.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 3.3e-10 68.9 82 54.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 4.3e-10 68.6 136 45.6
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.3e-10 68.6 119 47.1
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.3e-10 68.6 134 40.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 4.3e-10 68.6 134 40.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.3e-10 68.6 128 39.1
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.6e-10 68.2 116 42.2
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 5.6e-10 68.2 74 50.0
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.6e-10 68.2 127 41.7
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 7.3e-10 67.8 146 45.2
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.6e-10 67.4 136 44.9
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 9.6e-10 67.4 129 39.5
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-09 67.0 130 38.5
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.2e-09 67.0 80 48.8
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-09 66.2 143 38.5
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-09 66.2 93 47.3
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.8e-09 65.9 143 49.0
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.8e-09 65.9 74 52.7
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.6e-09 65.5 72 50.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.6e-09 65.5 137 41.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.6e-09 65.5 127 50.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 3.6e-09 65.5 79 51.9
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 4.7e-09 65.1 86 47.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.7e-09 65.1 71 50.7
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.7e-09 65.1 84 47.6
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.7e-09 65.1 76 52.6
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 4.7e-09 65.1 116 41.4
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 6.2e-09 64.7 72 52.8
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 6.2e-09 64.7 125 51.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 8.1e-09 64.3 138 45.7
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 8.1e-09 64.3 82 48.8
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.1e-08 63.9 132 37.1
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-08 63.9 130 50.8
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.4e-08 63.5 75 48.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.8e-08 63.2 146 42.5
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-08 62.8 71 52.1
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 2.4e-08 62.8 71 52.1
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 2.4e-08 62.8 71 52.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.0e-08 62.0 85 49.4
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.0e-08 62.0 131 38.2
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 5.2e-08 61.6 77 46.8
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.2e-08 61.6 71 52.1
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 5.2e-08 61.6 139 36.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.9e-08 60.8 85 45.9
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.2e-07 60.5 121 46.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.2e-07 60.5 78 53.8
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.2e-07 60.5 74 51.4
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.5e-07 60.1 82 50.0
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.0e-07 59.7 66 56.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 3.4e-07 58.9 135 46.7
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.4e-07 58.9 83 45.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.4e-07 58.9 79 46.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.4e-07 58.5 117 51.3
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.4e-07 58.5 77 48.1
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 5.8e-07 58.2 86 40.7
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.6e-07 57.8 84 46.4
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 7.6e-07 57.8 114 37.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 9.9e-07 57.4 68 47.1
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 9.9e-07 57.4 87 46.0
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.7e-06 56.6 76 48.7
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.2e-06 56.2 71 47.9
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 2.9e-06 55.8 129 36.4
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.8e-06 55.5 68 52.9
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.4e-06 54.3 67 50.7
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 8.4e-06 54.3 76 50.0


User provided reference genes

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