Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22646 Trifolium pratense HOM05D001390 ORTHO05D001522 3.5e-240 834.7 476 100.0
Medtr8g027685 Medicago truncatula HOM05D001390 ORTHO05D001522 7.7e-195 684.1 500 75.6
Psat4g161040 Pisum sativum HOM05D001390 ORTHO05D001522 7.9e-184 647.5 531 71.8
Ca_23537_v3 Cicer arietinum L. HOM05D001390 ORTHO05D001522 2.2e-178 629.4 506 70.6
Glyma.07G055900 Glycine max HOM05D001390 ORTHO05D001522 2.7e-147 526.2 513 61.0
Phvul.010G114100 Phaseolus vulgaris HOM05D001390 ORTHO05D001522 3.5e-139 499.2 511 58.5
Glyma.16G024600 Glycine max HOM05D001390 ORTHO05D001522 1.9e-137 493.4 513 59.1
Lj3g0006224 Lotus japonicus HOM05D001390 ORTHO05D001522 6.2e-136 488.4 510 58.4
VMungo0331G1667 Vigna mungo HOM05D001390 ORTHO05D001522 1.0e-122 444.5 511 53.8
arahy.Tifrunner.gnm1.ann1.CF5AFL Arachis hypogaea HOM05D001390 ORTHO05D001522 3.5e-115 419.5 527 52.9
arahy.Tifrunner.gnm1.ann1.369WQ5 Arachis hypogaea HOM05D001390 ORTHO05D001522 3.9e-114 416.0 527 52.6
VMungo0540G1222 Vigna mungo HOM05D001390 ORTHO05D001522 1.8e-103 380.6 514 48.8
Phvul.006G113000 Phaseolus vulgaris HOM05D001390 ORTHO05D001522 1.5e-102 377.5 515 48.9
Lalb_Chr15g0076271 Lupinus albus HOM05D001390 ORTHO05D001522 2.7e-99 366.7 530 46.6
Lalb_Chr18g0044451 Lupinus albus HOM05D001390 ORTHO05D001522 1.0e-93 348.2 518 46.5
TPR.G15354 Trifolium pratense HOM05D001390 ORTHO05D001522 1.2e-91 341.3 386 57.3
QL04p060935 Quercus lobata HOM05D001390 ORTHO05D001522 2.6e-86 323.6 520 44.0
Haze_15657 Corylus avellana HOM05D001390 ORTHO05D001522 4.2e-84 316.2 520 42.9
Dinv35115 Davidia involucrata HOM05D001390 ORTHO05D001522 1.8e-82 310.8 541 41.6
RcHm_v2.0_Chr1g0359431 Rosa chinensis HOM05D001390 ORTHO05D001522 8.2e-80 302.0 508 42.9
Ciclev10018452m.g Citrus clementina HOM05D001390 ORTHO05D001522 3.1e-79 300.1 520 41.2
Cfa003801 Carpinus fangiana HOM05D001390 ORTHO05D001522 9.1e-79 298.5 520 42.1
CiPaw.01G076500 Carya illinoinensis HOM05D001390 ORTHO05D001522 2.6e-78 297.0 528 40.5
Cpa.g.sc96.12 Carica papaya HOM05D001390 ORTHO05D001522 8.5e-77 292.0 516 39.7
Manes.05G023000 Manihot esculenta HOM05D001390 ORTHO05D001522 1.9e-76 290.8 507 39.8
MD01G1080500 Malus domestica HOM05D001390 ORTHO05D001522 4.2e-76 289.7 517 42.0
FAN06G3722 Fragaria x ananassa HOM05D001390 ORTHO05D001522 5.5e-76 289.3 506 41.5
FAN06G3445 Fragaria x ananassa HOM05D001390 ORTHO05D001522 1.2e-75 288.1 504 41.5
FAN10G2771 Fragaria x ananassa HOM05D001390 ORTHO05D001522 2.1e-75 287.3 507 41.8
Potri.014G098600 Populus trichocarpa HOM05D001390 ORTHO05D001522 2.1e-75 287.3 513 40.0
FAN10G0149 Fragaria x ananassa HOM05D001390 ORTHO05D001522 2.7e-75 287.0 506 41.9
FvH4_7g16420 Fragaria vesca HOM05D001390 ORTHO05D001522 3.6e-75 286.6 504 41.3
FAN03G3144 Fragaria x ananassa HOM05D001390 ORTHO05D001522 7.9e-75 285.4 506 41.3
CANSAT56G0571 Cannabis sativa HOM05D001390 ORTHO05D001522 2.3e-74 283.9 457 42.7
FAN01G2109 Fragaria x ananassa HOM05D001390 ORTHO05D001522 3.0e-74 283.5 506 41.1
Prupe.2G188000 Prunus persica HOM05D001390 ORTHO05D001522 3.3e-73 280.0 517 40.8
Sabra14G0072200 Salix brachista HOM05D001390 ORTHO05D001522 9.7e-73 278.5 513 40.0
Thecc.01G342900 Theobroma cacao HOM05D001390 ORTHO05D001522 9.7e-73 278.5 513 41.1
Potri.002G170900 Populus trichocarpa HOM05D001390 ORTHO05D001522 1.2e-70 271.6 512 38.3
MD07G1149400 Malus domestica HOM05D001390 ORTHO05D001522 1.5e-70 271.2 519 39.5
Sabra02G0141600 Salix brachista HOM05D001390 ORTHO05D001522 2.6e-70 270.4 506 38.5
TWI59G0604 Tripterygium wilfordii HOM05D001390 ORTHO05D001522 2.6e-70 270.4 520 39.8
TAR636G3487 Trochodendron aralioides HOM05D001390 ORTHO05D001522 1.0e-69 268.5 525 39.2
ClCG06G001240 Citrullus lanatus HOM05D001390 ORTHO05D001522 1.3e-69 268.1 517 38.3
Gohir.A08G125300 Gossypium hirsutum HOM05D001390 ORTHO05D001522 2.2e-69 267.3 528 36.6
COL.COLO4_06289 Corchorus olitorius HOM05D001390 ORTHO05D001522 3.8e-69 266.5 503 40.4
MELO3C022410.2 Cucumis melo HOM05D001390 ORTHO05D001522 2.7e-67 260.4 510 38.6
Gorai.004G151800 Gossypium raimondii HOM05D001390 ORTHO05D001522 4.7e-67 259.6 529 36.9
TWI14G0654 Tripterygium wilfordii HOM05D001390 ORTHO05D001522 6.1e-67 259.2 520 39.2
Gohir.D08G146300 Gossypium hirsutum HOM05D001390 ORTHO05D001522 9.7e-65 251.9 529 36.1
Actinidia20240 Actinidia chinensis HOM05D001390 ORTHO05D001522 1.7e-64 251.1 576 36.1
CSS0049873 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 6.3e-64 249.2 526 37.8
CsaV3_6G007160 Cucumis sativus L. HOM05D001390 ORTHO05D001522 3.1e-63 246.9 521 37.0
Sed0004722 Sechium edule HOM05D001390 ORTHO05D001522 2.6e-62 243.8 514 38.3
Eucgr.D02374 Eucalyptus grandis HOM05D001390 ORTHO05D001522 4.5e-62 243.0 463 38.7
Gohir.D12G115700 Gossypium hirsutum HOM05D001390 ORTHO05D001522 7.7e-62 242.3 512 39.3
TWI23G0337 Tripterygium wilfordii HOM05D001390 ORTHO05D001522 7.7e-62 242.3 453 38.6
Gorai.008G125200 Gossypium raimondii HOM05D001390 ORTHO05D001522 1.7e-61 241.1 511 38.9
THA.LOC104801374 Tarenaya hassleriana HOM05D001390 ORTHO05D001522 2.5e-60 237.3 509 37.1
Gohir.A12G112100 Gossypium hirsutum HOM05D001390 ORTHO05D001522 3.2e-60 236.9 512 38.9
Oeu035106.2 Olea europaea HOM05D001390 ORTHO05D001522 4.7e-59 233.0 536 36.4
Nn1g00227 Nelumbo nucifera HOM05D001390 ORTHO05D001522 5.7e-57 226.1 525 35.2
Duzib133G1296 Durio zibethinus HOM05D001390 ORTHO05D001522 1.3e-56 224.9 605 33.4
Cc02_g39340 Coffea canephora HOM05D001390 ORTHO05D001522 2.2e-56 224.2 536 37.3
Lj9C598G3 Lonicera japonica HOM05D001390 ORTHO05D001522 2.4e-55 220.7 517 35.6
TAR629G3253 Trochodendron aralioides HOM05D001390 ORTHO05D001522 2.4e-55 220.7 511 37.4
Sopen01g039640 Solanum pennellii HOM05D001390 ORTHO05D001522 5.3e-55 219.5 542 35.4
CAN.G986.5 Capsicum annuum HOM05D001390 ORTHO05D001522 5.9e-54 216.1 544 35.5
AUR62023464 Chenopodium quinoa HOM05D001390 ORTHO05D001522 1.3e-53 214.9 451 37.9
Nitab4.5_0005989g0010 Nicotiana tabacum HOM05D001390 ORTHO05D001522 1.3e-53 214.9 542 37.6
PGR031G0972 Punica granatum HOM05D001390 ORTHO05D001522 2.2e-53 214.2 525 34.7
PGSC0003DMG400000108 Solanum tuberosum HOM05D001390 ORTHO05D001522 2.2e-53 214.2 543 36.3
Solyc01g095900.4 Solanum lycopersicum HOM05D001390 ORTHO05D001522 2.9e-53 213.8 538 34.8
Nitab4.5_0002326g0150 Nicotiana tabacum HOM05D001390 ORTHO05D001522 8.5e-53 212.2 530 36.4
AUR62004489 Chenopodium quinoa HOM05D001390 ORTHO05D001522 1.1e-52 211.8 449 36.7
Aa31LG1G10660 Aethionema arabicum HOM05D001390 ORTHO05D001522 1.5e-52 211.5 467 36.6
CSS0022600 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 7.2e-52 209.1 626 34.2
Actinidia10137 Actinidia chinensis HOM05D001390 ORTHO05D001522 9.4e-52 208.8 480 36.2
CSS0022005 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 1.6e-51 208.0 626 34.0
Sc01g0002710 Simmondsia chinensis HOM05D001390 ORTHO05D001522 3.0e-50 203.8 446 35.7
Peaxi162Scf00786g00128 Petunia axillaris HOM05D001390 ORTHO05D001522 1.2e-49 201.8 525 35.0
Rhsim07G0004400 Rhododendron simsii HOM05D001390 ORTHO05D001522 1.6e-46 191.4 545 35.0
vmacro13159 Vaccinium macrocarpon HOM05D001390 ORTHO05D001522 1.3e-45 188.3 621 31.7
Peaxi162Scf00716g00016 Petunia axillaris HOM05D001390 ORTHO05D001522 1.9e-44 184.5 444 35.6
EL10Ac1g00272 Beta vulgaris HOM05D001390 ORTHO05D001522 7.2e-44 182.6 455 37.1
PSO170G5166 Papaver somniferum HOM05D001390 ORTHO05D001522 1.6e-43 181.4 514 34.0
Solyc05g050630.4 Solanum lycopersicum HOM05D001390 ORTHO05D001522 4.0e-42 176.8 458 32.5
Sopen05g029050 Solanum pennellii HOM05D001390 ORTHO05D001522 1.5e-41 174.9 458 32.3
PSO063G3385 Papaver somniferum HOM05D001390 ORTHO05D001522 3.4e-41 173.7 518 33.8
AT1G01320 Arabidopsis thaliana HOM05D001390 ORTHO05D001522 4.9e-40 169.9 469 35.2
Migut.B01871 Erythranthe guttata HOM05D001390 ORTHO05D001522 1.1e-39 168.7 452 34.7
Sp1g00960 Schrenkiella parvula HOM05D001390 ORTHO05D001522 2.4e-39 167.5 529 33.6
ECA236G1465 Erigeron canadensis HOM05D001390 ORTHO05D001522 3.1e-39 167.2 520 34.0
AL1G11130 Arabidopsis lyrata HOM05D001390 ORTHO05D001522 5.4e-39 166.4 469 34.1
Hund27200 Selenicereus undatus HOM05D001390 ORTHO05D001522 9.2e-39 165.6 400 35.2
SalBow3G2381 Salvia bowleyana HOM05D001390 ORTHO05D001522 2.7e-38 164.1 447 32.7
Carub.0001s0090 Capsella rubella HOM05D001390 ORTHO05D001522 4.5e-38 163.3 458 32.8
CARHR001120 Cardamine hirsuta HOM05D001390 ORTHO05D001522 1.0e-37 162.2 460 33.7
Aqoxy5G04242 Aquilegia oxysepala HOM05D001390 ORTHO05D001522 6.6e-37 159.5 509 31.4
Thhalv10006538m.g Eutrema salsugineum HOM05D001390 ORTHO05D001522 3.3e-36 157.1 511 34.1
SGA_v2.0_scaffold24G10700 Striga asiatica HOM05D001390 ORTHO05D001522 3.3e-36 157.1 451 31.0
HanXRQChr04g0120181 Helianthus annuus HOM05D001390 ORTHO05D001522 6.1e-35 152.9 462 31.8
BcaB03g13573 Brassica carinata HOM05D001390 ORTHO05D001522 8.0e-35 152.5 521 33.2
C05p00630 Brassica napus HOM05D001390 ORTHO05D001522 5.8e-33 146.4 519 32.4
BolC5t28851H Brassica oleracea HOM05D001390 ORTHO05D001522 9.8e-33 145.6 518 32.6
DCAR_025251 Daucus carota HOM05D001390 ORTHO05D001522 9.8e-33 145.6 492 31.3
A10p00600 Brassica napus HOM05D001390 ORTHO05D001522 8.3e-32 142.5 525 33.3
BraA10t42338Z Brassica rapa HOM05D001390 ORTHO05D001522 8.3e-32 142.5 525 33.3
Hund16711 Selenicereus undatus HOM05D001390 ORTHO05D001522 3.5e-30 137.1 434 29.7
PGSC0003DMG400007038 Solanum tuberosum HOM05D001390 ORTHO05D001522 4.6e-30 136.7 455 31.0
GSVIVG01027120001 Vitis vinifera HOM05D001390 ORTHO05D001522 1.9e-28 131.3 303 37.3
MBI06_g08471_MAGBIO Magnolia biondii HOM05D001390 ORTHO05D001522 3.6e-27 127.1 593 28.0
Atru.chr5.666 Acer truncatum HOM05D001390 ORTHO05D001522 8.0e-27 125.9 96 61.5
Zm00001eb306000 Zea mays HOM05D001390 ORTHO05D001522 4.0e-26 123.6 470 27.7
DCAR_005387 Daucus carota HOM05D001390 ORTHO05D001522 2.4e-23 114.4 419 30.1
HPP92_005280 Vanilla planifolia HOM05D001390 ORTHO05D001522 7.5e-17 92.8 495 25.1
Atru.chr5.667 Acer truncatum HOM05D001390 ORTHO05D001522 4.9e-16 90.1 271 32.5
CDE02G3153 Ceratophyllum demersum HOM05D001390 ORTHO05D001522 3.5e-14 84.0 486 25.9
Lsat_1_v5_gn_7_1141 Lactuca sativa HOM05D001390 ORTHO05D001522 6.6e-13 79.7 351 28.5
Psat7g127840 Pisum sativum HOM05D001390 ORTHO05D013105 7.6e-09 66.2 83 55.4
ATR0602G163 Amborella trichopoda HOM05D001390 ORTHO05D001522 4.9e-08 63.5 493 23.9
CDE08G1208 Ceratophyllum demersum HOM05D001390 ORTHO05D001522 1.9e-07 61.6 539 21.9
Psat7g127920 Pisum sativum HOM05D000104 ORTHO05D320583 9.2e-07 59.3 76 53.9


User provided reference genes

Program Settings