Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22629 Trifolium pratense HOM05D000028 ORTHO05D018515 1.2e-34 149.4 81 100.0
Psat2g107920 Pisum sativum HOM05D000028 ORTHO05D000390 3.0e-27 124.8 81 77.8
Medtr5g034910 Medicago truncatula HOM05D000028 ORTHO05D000390 1.2e-26 122.9 81 80.2
TPR.G4360 Trifolium pratense HOM05D000028 ORTHO05D000390 1.3e-25 119.4 80 77.5
Medtr5g034970 Medicago truncatula HOM05D000028 ORTHO05D000390 3.7e-25 117.9 81 74.1
Lj2g0000168 Lotus japonicus HOM05D000028 ORTHO05D000390 1.6e-23 112.5 81 75.3
Medtr5g034980 Medicago truncatula HOM05D000028 ORTHO05D000390 1.6e-23 112.5 81 71.6
Psat2g108000 Pisum sativum HOM05D000028 ORTHO05D000390 1.6e-23 112.5 81 69.1
TPR.G4381 Trifolium pratense HOM05D000028 ORTHO05D000390 1.6e-23 112.5 81 72.8
Medtr5g034930 Medicago truncatula HOM05D000028 ORTHO05D000390 2.0e-23 112.1 81 71.6
Psat2g108400 Pisum sativum HOM05D000028 ORTHO05D000390 5.9e-23 110.5 81 69.1
Lj2g0014167 Lotus japonicus HOM05D000028 ORTHO05D000390 1.0e-22 109.8 81 71.6
Lj2g0021306 Lotus japonicus HOM05D000028 ORTHO05D000390 3.9e-22 107.8 81 70.4
Lj2g0003992 Lotus japonicus HOM05D000028 ORTHO05D000390 7.3e-21 103.6 81 69.1
Glyma.02G032600 Glycine max HOM05D000028 ORTHO05D000390 1.5e-18 95.9 81 64.2
Psat2g108160 Pisum sativum HOM05D000028 ORTHO05D000390 2.6e-18 95.1 64 76.6
TPR.G4373 Trifolium pratense HOM05D000028 ORTHO05D000390 3.4e-18 94.7 81 67.9
Phvul.002G072950 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 7.5e-18 93.6 81 63.0
VMungo1215G0328 Vigna mungo HOM05D000028 ORTHO05D000390 2.9e-17 91.7 74 64.9
TPR.G4446 Trifolium pratense HOM05D000028 ORTHO05D000390 5.4e-16 87.4 48 91.7
Glyma.01G033500 Glycine max HOM05D000028 ORTHO05D000390 7.3e-13 77.0 78 53.8
Glyma.02G032500 Glycine max HOM05D000028 ORTHO05D000390 7.3e-13 77.0 78 53.8
arahy.Tifrunner.gnm1.ann1.IA7ZAP Arachis hypogaea HOM05D000028 ORTHO05D000390 2.1e-12 75.5 72 58.3
arahy.Tifrunner.gnm1.ann1.32M7EX Arachis hypogaea HOM05D000028 ORTHO05D000390 2.8e-12 75.1 72 58.3
Glyma.01G033700 Glycine max HOM05D000028 ORTHO05D000390 8.1e-12 73.6 74 58.1
QL03p062052 Quercus lobata HOM05D000028 ORTHO05D000390 2.3e-11 72.0 78 52.6
QL03p062060 Quercus lobata HOM05D000028 ORTHO05D000390 2.3e-11 72.0 78 52.6
VMungo1215G2785 Vigna mungo HOM05D000028 ORTHO05D000390 4.0e-11 71.2 76 51.3
Nitab4.5_0002198g0070 Nicotiana tabacum HOM05D000028 ORTHO05D000390 8.9e-11 70.1 81 50.6
VMungo1215G0256 Vigna mungo HOM05D000028 ORTHO05D000390 2.0e-10 68.9 78 48.7
Prupe.1G257100 Prunus persica HOM05D000028 ORTHO05D000390 3.4e-10 68.2 72 51.4
QL03p062068 Quercus lobata HOM05D000028 ORTHO05D000390 3.4e-10 68.2 74 54.1
Phvul.002G073000 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 5.8e-10 67.4 75 48.0
Solyc05g005830.3 Solanum lycopersicum HOM05D000028 ORTHO05D000390 7.5e-10 67.0 81 48.1
Sopen05g001840 Solanum pennellii HOM05D000028 ORTHO05D000390 7.5e-10 67.0 81 48.1
Thecc.02G246900 Theobroma cacao HOM05D000028 ORTHO05D000390 7.5e-10 67.0 77 48.1
CiPaw.05G148100 Carya illinoinensis HOM05D000028 ORTHO05D000390 9.9e-10 66.6 78 46.2
Actinidia15024 Actinidia chinensis HOM05D000028 ORTHO05D000390 2.2e-09 65.5 74 52.7
Duzib251G0333 Durio zibethinus HOM05D000028 ORTHO05D000390 3.7e-09 64.7 77 46.8
Gohir.A03G141400 Gossypium hirsutum HOM05D000028 ORTHO05D000390 3.7e-09 64.7 74 47.3
Gohir.D02G164266 Gossypium hirsutum HOM05D000028 ORTHO05D000390 3.7e-09 64.7 74 47.3
Gohir.D02G164400 Gossypium hirsutum HOM05D000028 ORTHO05D000390 3.7e-09 64.7 74 47.3
Gorai.005G184300 Gossypium raimondii HOM05D000028 ORTHO05D000390 3.7e-09 64.7 74 47.3
Gorai.005G184400 Gossypium raimondii HOM05D000028 ORTHO05D000390 3.7e-09 64.7 74 47.3
Nitab4.5_0000052g0250 Nicotiana tabacum HOM05D000028 ORTHO05D000390 4.9e-09 64.3 82 50.0
PGR102G1235 Punica granatum HOM05D000028 ORTHO05D000390 4.9e-09 64.3 74 50.0
Manes.01G197900 Manihot esculenta HOM05D000028 ORTHO05D000390 6.4e-09 63.9 74 47.3
arahy.Tifrunner.gnm1.ann1.71BALL Arachis hypogaea HOM05D000028 ORTHO05D000390 1.9e-08 62.4 78 52.6
GSVIVG01020190001 Vitis vinifera HOM05D000028 ORTHO05D000390 1.9e-08 62.4 70 47.1
VMungo1309G1786 Vigna mungo HOM05D000028 ORTHO05D000390 2.4e-08 62.0 76 46.1
Cfa009121 Carpinus fangiana HOM05D000028 ORTHO05D000390 3.2e-08 61.6 70 47.1
Dinv31013 Davidia involucrata HOM05D000028 ORTHO05D000390 3.2e-08 61.6 75 46.7
Dinv31089 Davidia involucrata HOM05D000028 ORTHO05D000390 3.2e-08 61.6 75 46.7
CAN.G206.45 Capsicum annuum HOM05D000028 ORTHO05D000390 4.1e-08 61.2 72 50.0
Dinv24889 Davidia involucrata HOM05D000028 ORTHO05D000390 4.1e-08 61.2 79 48.1
TAR629G3011 Trochodendron aralioides HOM05D000028 ORTHO05D000390 4.1e-08 61.2 72 50.0
BcaC08g44446 Brassica carinata HOM05D000028 ORTHO05D000390 7.1e-08 60.5 69 44.9
C06p18920 Brassica napus HOM05D000028 ORTHO05D000390 7.1e-08 60.5 69 44.9
BolC6t37097H Brassica oleracea HOM05D000028 ORTHO05D000390 7.1e-08 60.5 69 44.9
Manes.01G197800 Manihot esculenta HOM05D000028 ORTHO05D000390 7.1e-08 60.5 73 43.8
Nitab4.5_0007254g0070 Nicotiana tabacum HOM05D000028 ORTHO05D000390 7.1e-08 60.5 72 50.0
Solyc02g087060.4 Solanum lycopersicum HOM05D000028 ORTHO05D000390 7.1e-08 60.5 72 50.0
Sopen02g031820 Solanum pennellii HOM05D000028 ORTHO05D000390 7.1e-08 60.5 72 50.0
Dinv24888 Davidia involucrata HOM05D000028 ORTHO05D000390 9.2e-08 60.1 72 45.8
BraA07t29718Z Brassica rapa HOM05D000028 ORTHO05D000390 1.2e-07 59.7 69 43.5
COL.COLO4_19530 Corchorus olitorius HOM05D000028 ORTHO05D000390 1.2e-07 59.7 66 47.0
Psat6g025840 Pisum sativum HOM05D000028 ORTHO05D000390 1.6e-07 59.3 72 45.8
BcaB02g07955 Brassica carinata HOM05D000028 ORTHO05D000390 2.1e-07 58.9 78 39.7
CSS0049008 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 2.1e-07 58.9 72 43.1
CiPaw.05G148300 Carya illinoinensis HOM05D000028 ORTHO05D000390 2.1e-07 58.9 74 43.2
Lj4g0012892 Lotus japonicus HOM05D000028 ORTHO05D000390 2.1e-07 58.9 70 51.4
Peaxi162Scf00421g00330 Petunia axillaris HOM05D000028 ORTHO05D000390 2.1e-07 58.9 58 55.2
Atru.chr9.2427 Acer truncatum HOM05D000028 ORTHO05D000390 2.7e-07 58.5 75 48.0
A07p20190 Brassica napus HOM05D000028 ORTHO05D000390 2.7e-07 58.5 69 42.0
Dinv24890 Davidia involucrata HOM05D000028 ORTHO05D000390 2.7e-07 58.5 72 44.4
CARHR261890 Cardamine hirsuta HOM05D000028 ORTHO05D000390 3.5e-07 58.2 72 44.4
CsaV3_3G042160 Cucumis sativus L. HOM05D000028 ORTHO05D000390 3.5e-07 58.2 72 45.8
Sp7g01730 Schrenkiella parvula HOM05D000028 ORTHO05D000390 3.5e-07 58.2 70 44.3
TWI15G1080 Tripterygium wilfordii HOM05D000028 ORTHO05D000390 3.5e-07 58.2 74 48.6
AT5G40230 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 4.6e-07 57.8 69 43.5
BcaB06g27752 Brassica carinata HOM05D000028 ORTHO05D000390 4.6e-07 57.8 79 39.2
BraA07t29719Z Brassica rapa HOM05D000028 ORTHO05D000390 4.6e-07 57.8 80 40.0
Potri.015G073200 Populus trichocarpa HOM05D000028 ORTHO05D000390 4.6e-07 57.8 70 50.0
PGR119G1271 Punica granatum HOM05D000028 ORTHO05D000390 4.6e-07 57.8 74 47.3
Aa31LG9G1390 Aethionema arabicum HOM05D000028 ORTHO05D000390 6.0e-07 57.4 71 42.3
CsaV3_3G042150 Cucumis sativus L. HOM05D000028 ORTHO05D000390 6.0e-07 57.4 72 45.8
Thhalv10027804m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 6.0e-07 57.4 74 41.9
BcaB02g07953 Brassica carinata HOM05D000028 ORTHO05D000390 7.8e-07 57.0 79 40.5
Duzib205G1445 Durio zibethinus HOM05D000028 ORTHO05D000390 7.8e-07 57.0 70 50.0
arahy.Tifrunner.gnm1.ann1.1WRX04 Arachis hypogaea HOM05D000028 ORTHO05D000390 1.0e-06 56.6 78 48.7
CSS0031182 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 1.0e-06 56.6 75 49.3
Gorai.006G188000 Gossypium raimondii HOM05D000028 ORTHO05D000390 1.0e-06 56.6 70 48.6
TWI81G0086 Tripterygium wilfordii HOM05D000028 ORTHO05D000390 1.0e-06 56.6 72 50.0
AT5G40240 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 1.3e-06 56.2 69 43.5
BcaC02g08823 Brassica carinata HOM05D000028 ORTHO05D000390 1.3e-06 56.2 79 38.0
C04p46870 Brassica napus HOM05D000028 ORTHO05D000390 1.3e-06 56.2 78 42.3
C04p50050 Brassica napus HOM05D000028 ORTHO05D000390 1.3e-06 56.2 79 38.0
BolC4t26276H Brassica oleracea HOM05D000028 ORTHO05D000390 1.3e-06 56.2 78 42.3
CARHR261870 Cardamine hirsuta HOM05D000028 ORTHO05D000390 1.3e-06 56.2 76 40.8
Cfa019084 Carpinus fangiana HOM05D000028 ORTHO05D000390 1.3e-06 56.2 75 44.0
Thhalv10027803m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 1.3e-06 56.2 79 40.5
Gohir.D09G166200 Gossypium hirsutum HOM05D000028 ORTHO05D000390 1.3e-06 56.2 70 48.6
Prupe.5G177200 Prunus persica HOM05D000028 ORTHO05D000390 1.3e-06 56.2 70 47.1
arahy.Tifrunner.gnm1.ann1.MW20QI Arachis hypogaea HOM05D000028 ORTHO05D000390 1.7e-06 55.8 70 47.1
Haze_07478 Corylus avellana HOM05D000028 ORTHO05D000390 1.7e-06 55.8 75 44.0
FAN18G0406 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.7e-06 55.8 70 48.6
MD06G1178000 Malus domestica HOM05D000028 ORTHO05D000390 1.7e-06 55.8 70 47.1
Sp7g01720 Schrenkiella parvula HOM05D000028 ORTHO05D000390 1.7e-06 55.8 72 41.7
Hund30813 Selenicereus undatus HOM05D029147 ORTHO05D018515 1.7e-06 55.8 75 38.7
Actinidia04977 Actinidia chinensis HOM05D000028 ORTHO05D000390 2.3e-06 55.5 70 47.1
AL7G49750 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 2.3e-06 55.5 69 43.5
BcaB06g27459 Brassica carinata HOM05D000028 ORTHO05D000390 2.3e-06 55.5 81 38.3
RcHm_v2.0_Chr7g0194041 Rosa chinensis HOM05D000028 ORTHO05D000390 2.3e-06 55.5 70 48.6
Sp7g01750 Schrenkiella parvula HOM05D000028 ORTHO05D000390 2.3e-06 55.5 81 38.3
Atru.chr11.1979 Acer truncatum HOM05D000028 ORTHO05D000390 3.0e-06 55.1 80 47.5
AL7G49762 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 3.0e-06 55.1 69 43.5
AL7G49770 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 3.0e-06 55.1 81 39.5
arahy.Tifrunner.gnm1.ann1.PZRY5L Arachis hypogaea HOM05D000028 ORTHO05D000390 3.0e-06 55.1 70 47.1
A04p13120 Brassica napus HOM05D000028 ORTHO05D000390 3.0e-06 55.1 81 37.0
BraA04t16971Z Brassica rapa HOM05D000028 ORTHO05D000390 3.0e-06 55.1 81 37.0
CANSAT64G0809 Cannabis sativa HOM05D000028 ORTHO05D000390 3.0e-06 55.1 71 43.7
CANSAT64G1488 Cannabis sativa HOM05D000028 ORTHO05D000390 3.0e-06 55.1 71 43.7
MELO3C009934.2 Cucumis melo HOM05D000028 ORTHO05D000390 3.0e-06 55.1 72 44.4
Thhalv10027830m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 3.0e-06 55.1 76 42.1
FAN04G2236 Fragaria x ananassa HOM05D000028 ORTHO05D000390 3.0e-06 55.1 70 48.6
TPR.G38836 Trifolium pratense HOM05D000028 ORTHO05D000390 3.0e-06 55.1 72 44.4
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 3.9e-06 54.7 78 37.2
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 3.9e-06 54.7 78 37.2
Glyma.06G123500 Glycine max HOM05D000028 ORTHO05D000390 3.9e-06 54.7 76 42.1
Gohir.A09G170500 Gossypium hirsutum HOM05D000028 ORTHO05D000390 3.9e-06 54.7 70 47.1
MBI14_g15965_MAGBIO Magnolia biondii HOM05D000028 ORTHO05D000390 3.9e-06 54.7 69 44.9
Rhsim08G0169500 Rhododendron simsii HOM05D000028 ORTHO05D000390 3.9e-06 54.7 69 46.4
Sed0002128 Sechium edule HOM05D000028 ORTHO05D000390 3.9e-06 54.7 78 41.0
AL5G17590 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 5.1e-06 54.3 78 43.6
AT3G28080 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 5.1e-06 54.3 76 44.7
BcaC08g44447 Brassica carinata HOM05D000028 ORTHO05D000390 5.1e-06 54.3 80 38.8
C06p18960 Brassica napus HOM05D000028 ORTHO05D000390 5.1e-06 54.3 80 38.8
BolC4t26601H Brassica oleracea HOM05D000028 ORTHO05D000390 5.1e-06 54.3 71 38.0
Carub.0005s0662 Capsella rubella HOM05D000028 ORTHO05D000390 5.1e-06 54.3 76 44.7
FvH4_5g05000 Fragaria vesca HOM05D000028 ORTHO05D000390 5.1e-06 54.3 70 47.1
FAN13G3193 Fragaria x ananassa HOM05D000028 ORTHO05D000390 5.1e-06 54.3 70 47.1
HanXRQChr03g0082791 Helianthus annuus HOM05D000028 ORTHO05D000390 5.1e-06 54.3 81 38.3
Hma1.2p1_0697F.1_g204890 Hydrangea macrophylla HOM05D000028 ORTHO05D000390 5.1e-06 54.3 71 45.1
Manes.14G068500 Manihot esculenta HOM05D000028 ORTHO05D000390 5.1e-06 54.3 70 44.3
AT5G40210 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 6.6e-06 53.9 78 43.6
Carub.0007s3539 Capsella rubella HOM05D000028 ORTHO05D000390 6.6e-06 53.9 69 42.0
Carub.0007s3540 Capsella rubella HOM05D000028 ORTHO05D000390 6.6e-06 53.9 69 42.0
HanXRQChr16g0532911 Helianthus annuus HOM05D000028 ORTHO05D000390 6.6e-06 53.9 81 38.3
Hma1.2p1_0967F.1_g242330 Hydrangea macrophylla HOM05D000028 ORTHO05D000390 6.6e-06 53.9 71 46.5
QL02p077352 Quercus lobata HOM05D000028 ORTHO05D000390 6.6e-06 53.9 72 41.7
QL03p062088 Quercus lobata HOM05D000028 ORTHO05D000390 6.6e-06 53.9 78 39.7
Sabra15G0097400 Salix brachista HOM05D000028 ORTHO05D000390 6.6e-06 53.9 69 46.4
Sp2g17060 Schrenkiella parvula HOM05D000028 ORTHO05D000390 6.6e-06 53.9 78 43.6
PGSC0003DMG400004118 Solanum tuberosum HOM05D000028 ORTHO05D000390 6.6e-06 53.9 58 50.0
AT3G28100 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 8.6e-06 53.5 76 43.4
BcaB04g19454 Brassica carinata HOM05D000028 ORTHO05D000390 8.6e-06 53.5 71 45.1
DCAR_011225 Daucus carota HOM05D000028 ORTHO05D000390 8.6e-06 53.5 72 45.8
Thhalv10004446m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 8.6e-06 53.5 71 45.1
FAN05G1666 Fragaria x ananassa HOM05D000028 ORTHO05D000390 8.6e-06 53.5 71 45.1
HanXRQChr15g0491191 Helianthus annuus HOM05D000028 ORTHO05D000390 8.6e-06 53.5 73 43.8
Sp2g17050 Schrenkiella parvula HOM05D000028 ORTHO05D000390 8.6e-06 53.5 71 45.1
Sp7g01740 Schrenkiella parvula HOM05D000028 ORTHO05D000390 8.6e-06 53.5 71 40.8
vmacro16269 Vaccinium macrocarpon HOM05D000028 ORTHO05D000390 8.6e-06 53.5 76 36.8
vmacro19369 Vaccinium macrocarpon HOM05D000028 ORTHO05D000390 8.6e-06 53.5 77 41.6


User provided reference genes

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