Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 0.0e+00 1489.6 765 100.0
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 3.0e-294 1015.0 756 72.1
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 4.1e-283 978.0 750 72.1
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 6.7e-233 811.2 742 65.2
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.0e-216 756.5 759 57.6
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.5e-213 746.9 754 57.7
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.2e-210 737.3 763 56.7
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 5.2e-193 678.7 756 53.7
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.6e-189 667.2 757 52.6
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 4.3e-155 552.7 763 46.5
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 3.6e-154 549.7 757 46.8
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.3e-153 547.0 763 46.5
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 9.9e-136 488.4 757 44.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 2.5e-78 297.7 731 35.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.5e-75 288.5 738 32.7
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.0e-75 288.1 753 32.9
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.1e-73 282.3 769 33.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.2e-72 278.9 761 33.1
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.5e-70 271.9 660 34.2
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 2.4e-65 254.6 738 32.9
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 3.5e-64 250.8 735 32.9
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 7.8e-64 249.6 768 32.7
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.3e-63 248.8 729 32.6
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.3e-63 248.1 746 31.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 2.9e-63 247.7 730 32.5
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 6.6e-63 246.5 740 32.7
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 8.6e-63 246.1 741 32.8
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 9.5e-62 242.7 732 31.4
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.1e-61 241.5 737 32.2
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.8e-61 241.1 541 34.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.0e-60 239.2 734 32.8
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 6.4e-58 229.9 793 29.3
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.6e-56 225.3 756 31.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 8.6e-55 219.5 755 30.3
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.1e-54 219.2 756 30.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 7.3e-54 216.5 758 32.1
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.2e-53 215.7 790 30.1
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.2e-53 215.7 737 31.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 4.7e-53 213.8 594 34.0
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.5e-51 208.8 736 30.3
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 4.9e-50 203.8 743 30.7
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 8.3e-50 203.0 764 28.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 8.3e-50 203.0 785 28.2
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.4e-49 201.4 619 32.1
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 4.1e-49 200.7 545 31.6
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.2e-48 199.1 395 37.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 7.8e-48 196.4 766 32.1
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 7.8e-48 196.4 741 29.1
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 3.9e-47 194.1 515 33.8
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.1e-46 192.6 564 31.9
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.5e-46 192.2 743 29.7
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 2.5e-46 191.4 557 32.1
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 4.3e-46 190.7 741 29.4
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.8e-45 188.0 723 30.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.4e-44 185.7 738 30.8
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.0e-43 181.8 741 29.8
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 7.5e-43 179.9 736 28.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.2e-42 178.3 768 28.0
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 3.7e-42 177.6 439 34.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.4e-41 175.6 740 28.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-40 172.6 386 36.0
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 6.6e-39 166.8 426 31.9
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.5e-38 164.9 397 33.8
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 4.3e-38 164.1 538 30.7
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.4e-36 159.1 418 30.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 3.1e-36 157.9 508 29.9
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.2e-34 151.8 408 29.9
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.2e-34 151.8 412 29.6
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 5.4e-33 147.1 498 29.9
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 6.0e-32 143.7 450 30.7
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 3.9e-31 141.0 465 31.0
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 5.6e-30 137.1 501 30.5
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 7.3e-30 136.7 477 29.8
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-29 136.0 430 30.5
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.1e-29 135.2 409 32.5
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.4e-28 131.7 403 31.5
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.2e-28 130.6 388 31.2
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.0e-28 129.8 526 27.6
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.6e-27 128.3 515 28.7
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 3.8e-26 124.4 431 30.2
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.2e-25 120.9 408 30.6
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 7.8e-24 116.7 399 29.3
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.8e-24 116.7 230 35.7
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.3e-23 115.9 390 28.2
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 8.7e-23 113.2 470 29.4
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 8.7e-23 113.2 666 25.4
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 5.6e-22 110.5 449 28.7
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.6e-21 109.0 566 25.6
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 6.2e-21 107.1 566 25.4
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-20 106.3 392 29.1
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.1e-20 106.3 345 30.7
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.1e-20 104.8 442 26.2
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 9.0e-20 103.2 336 29.5
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 5.8e-19 100.5 393 28.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.3e-18 99.4 345 30.7
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.2e-18 98.6 336 28.9
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-18 98.6 336 28.9
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.2e-18 98.6 336 28.9
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 2.2e-18 98.6 221 33.9
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 4.9e-18 97.4 348 30.5
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 4.9e-18 97.4 348 28.7
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 4.9e-18 97.4 348 28.7
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 6.4e-18 97.1 350 29.1
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 8.4e-18 96.7 231 33.8
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.4e-17 95.9 391 27.4
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.2e-17 94.7 377 27.1
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 9.3e-17 93.2 280 31.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 9.3e-17 93.2 280 31.8
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.6e-16 92.4 348 28.2
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 2.1e-16 92.0 389 27.2
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.0e-15 89.7 320 31.2
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.5e-14 85.9 200 34.0
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 1.5e-14 85.9 422 25.6
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 7.4e-14 83.6 423 27.7
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 2.1e-13 82.0 225 33.3
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 2.8e-13 81.6 663 24.1
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.4e-12 78.6 656 24.5
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 3.1e-12 78.2 385 26.0
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 6.9e-12 77.0 96 42.7
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.0e-11 75.5 93 40.9
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 9.9e-11 73.2 210 31.9
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.9e-10 70.9 528 23.9
VMungo0251G2908 Vigna mungo HOM05D007001 ORTHO05D035952 2.4e-09 68.6 74 50.0
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 6.7e-07 60.5 257 30.0
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 8.7e-07 60.1 389 24.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.1e-06 59.7 180 29.4
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 2.5e-06 58.5 166 30.1
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 7.4e-06 57.0 213 25.4
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 7.4e-06 57.0 246 24.8
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 9.6e-06 56.6 223 31.4
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 9.6e-06 56.6 223 31.4


User provided reference genes

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