Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 7.1e-116 420.6 214 100.0
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 8.7e-106 387.1 207 93.7
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 1.1e-103 380.2 207 91.3
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 9.0e-103 377.1 207 90.3
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 9.0e-95 350.5 200 85.0
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 3.8e-93 345.1 207 79.7
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 6.5e-93 344.4 207 82.1
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 9.3e-92 340.5 207 80.2
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 9.3e-92 340.5 207 78.3
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 4.1e-87 325.1 207 75.4
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 9.0e-87 323.9 207 75.4
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 1.4e-82 310.1 206 71.8
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 1.1e-81 307.0 199 72.9
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.5e-81 306.6 199 73.9
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 2.0e-81 306.2 199 74.4
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 3.7e-80 302.0 199 73.4
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 8.2e-80 300.8 199 72.4
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 1.4e-79 300.1 199 70.9
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 1.4e-79 300.1 198 72.2
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 2.4e-79 299.3 199 71.9
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 5.3e-79 298.1 198 72.2
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 5.3e-79 298.1 198 72.2
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 5.3e-79 298.1 199 72.4
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 1.2e-78 297.0 199 71.4
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 1.2e-78 297.0 200 68.5
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 2.6e-78 295.8 200 71.0
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 2.9e-77 292.4 207 64.3
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 2.9e-77 292.4 207 65.2
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 6.5e-77 291.2 207 67.1
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 6.5e-77 291.2 207 67.1
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 6.5e-77 291.2 200 66.5
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 8.5e-77 290.8 198 71.2
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 1.4e-76 290.0 199 69.8
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.4e-76 290.0 199 69.8
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 3.2e-76 288.9 199 71.9
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 5.5e-76 288.1 207 65.2
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 7.2e-76 287.7 200 68.5
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 7.2e-76 287.7 200 68.5
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 9.4e-76 287.3 200 69.5
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 2.7e-75 285.8 200 66.5
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 4.7e-75 285.0 201 65.2
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 3.0e-74 282.3 200 67.0
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 3.0e-74 282.3 201 64.2
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 6.7e-74 281.2 201 63.7
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 8.8e-74 280.8 199 69.3
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.1e-73 280.4 199 67.8
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 1.5e-73 280.0 200 68.5
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 2.6e-73 279.3 199 66.3
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 3.3e-73 278.9 201 67.2
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 1.3e-72 276.9 207 62.8
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 2.2e-72 276.2 207 61.8
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 2.8e-72 275.8 203 65.5
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 3.7e-72 275.4 200 66.5
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 3.7e-72 275.4 200 65.5
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 8.2e-72 274.2 201 65.2
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 1.8e-71 273.1 199 67.3
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 2.0e-70 269.6 219 61.2
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.0e-70 269.6 199 64.8
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 2.6e-70 269.2 199 64.8
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 4.5e-70 268.5 207 61.4
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 5.9e-70 268.1 199 64.8
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 7.7e-70 267.7 198 66.2
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 1.0e-69 267.3 203 63.5
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 1.3e-69 266.9 207 61.4
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 3.8e-69 265.4 202 61.4
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 5.0e-69 265.0 201 61.7
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.1e-68 263.8 199 64.3
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 1.5e-68 263.5 202 62.4
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 1.9e-68 263.1 199 63.8
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 1.9e-68 263.1 198 64.1
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 3.2e-68 262.3 199 64.3
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 3.2e-68 262.3 204 60.3
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 4.2e-68 261.9 209 60.3
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 5.5e-68 261.5 198 64.1
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 7.2e-68 261.2 198 64.1
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.2e-67 260.4 199 63.3
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 1.6e-67 260.0 196 65.3
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 1.6e-67 260.0 204 61.8
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 2.7e-67 259.2 185 66.5
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 3.6e-67 258.8 198 64.1
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 3.6e-67 258.8 198 63.6
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 1.8e-66 256.5 207 60.9
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 4.0e-66 255.4 200 60.0
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 5.2e-66 255.0 196 62.2
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 2.0e-65 253.1 275 52.4
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 3.3e-65 252.3 200 60.0
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 3.3e-65 252.3 200 60.0
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 4.4e-65 251.9 199 58.3
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 7.5e-65 251.1 204 58.8
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 1.7e-64 250.0 200 59.5
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 2.8e-64 249.2 207 57.0
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 1.8e-63 246.5 200 58.0
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 1.8e-63 246.5 200 58.0
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 7.7e-62 241.1 161 73.9
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 6.5e-61 238.0 200 57.5
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 6.5e-61 238.0 197 59.9
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.3e-58 229.6 172 65.7
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 3.0e-58 229.2 289 46.0
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 4.0e-58 228.8 205 56.1
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 6.8e-58 228.0 200 55.0
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 5.4e-55 218.4 201 54.2
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 7.2e-52 208.0 187 59.4
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 4.0e-50 202.2 209 46.9
Mapoly0071s0087 Marchantia polymorpha HOM05D006530 ORTHO05D008283 4.5e-46 188.7 199 49.7
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 2.9e-45 186.0 203 46.3
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.4e-42 177.2 142 61.3
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.2e-32 143.3 115 61.7
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.2e-32 143.3 115 61.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 6.4e-32 141.7 114 61.4
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 4.0e-26 122.5 108 58.3
MCO07G103 Micromonas commoda HOM05D006530 ORTHO05D008283 1.5e-25 120.6 213 35.7
Cre16.g684000 Chlamydomonas reinhardtii HOM05D006530 ORTHO05D008283 5.1e-21 105.5 204 30.9
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 6.8e-18 95.1 170 36.5
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 1.3e-13 80.9 94 41.5
Cfa025683 Carpinus fangiana HOM05D006530 ORTHO05D008283 4.6e-06 55.8 192 27.1


User provided reference genes

Program Settings