Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 0.0e+00 1186.8 605 100.0
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 0.0e+00 1089.3 604 89.7
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 4.1e-312 1073.5 632 85.4
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 4.2e-307 1057.4 603 86.9
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 1.5e-272 942.6 606 77.6
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 1.5e-272 942.6 606 77.6
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.6e-272 941.8 605 77.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.3e-268 929.5 590 79.7
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.9e-262 909.1 555 80.5
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 8.4e-255 883.6 579 75.5
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.0e-252 876.7 575 76.5
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 3.0e-252 875.2 604 72.4
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 1.9e-251 872.5 584 75.5
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 2.1e-250 869.0 575 75.1
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 9.0e-249 863.6 573 74.5
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 5.8e-248 860.9 572 75.2
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 2.2e-247 859.0 573 73.8
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.2e-247 859.0 585 73.3
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 8.4e-247 857.1 581 73.1
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.4e-246 856.3 581 73.1
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.4e-246 856.3 581 73.1
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.4e-246 856.3 580 73.4
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.2e-245 853.2 580 72.9
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 1.6e-245 852.8 578 74.9
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 8.7e-244 847.0 590 72.0
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.5e-243 846.3 580 72.8
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.6e-242 842.8 580 72.4
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.1e-241 840.1 574 72.8
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.8e-241 839.3 572 73.4
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 3.1e-241 838.6 572 72.4
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 2.6e-240 835.5 574 71.6
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.6e-240 835.5 570 73.3
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 3.4e-240 835.1 576 72.9
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 6.4e-239 830.9 549 74.0
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.4e-238 829.7 584 71.6
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.4e-238 828.9 550 74.2
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 9.3e-238 827.0 575 70.6
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 9.3e-238 827.0 550 74.2
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 2.7e-237 825.5 580 71.7
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 4.6e-237 824.7 584 70.0
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 7.9e-237 823.9 579 71.3
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 1.8e-236 822.8 572 71.5
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.0e-236 822.0 575 72.0
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 3.0e-236 822.0 575 70.6
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 3.9e-236 821.6 550 73.8
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 7.4e-235 817.4 554 72.6
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 9.6e-235 817.0 571 71.6
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 8.1e-234 813.9 605 68.8
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 3.1e-233 812.0 582 71.6
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 4.0e-233 811.6 573 70.0
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 4.0e-233 811.6 580 70.0
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 9.0e-233 810.4 582 70.8
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 2.6e-232 808.9 571 71.3
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 7.6e-232 807.4 553 71.6
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 7.6e-232 807.4 551 72.1
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.7e-231 806.2 573 71.7
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 2.9e-231 805.4 607 66.4
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 6.5e-231 804.3 551 71.7
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 9.3e-230 800.4 587 68.1
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 1.0e-228 797.0 551 71.1
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 2.3e-228 795.8 554 70.9
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 3.3e-227 792.0 554 70.0
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 7.4e-227 790.8 557 69.7
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 4.1e-225 785.0 588 67.9
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 4.1e-225 785.0 548 71.0
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 4.1e-225 785.0 558 70.4
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 5.3e-225 784.6 555 70.3
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 1.5e-224 783.1 550 70.5
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 4.5e-224 781.6 576 67.7
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 5.9e-224 781.2 553 69.8
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.0e-223 780.4 548 70.6
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.0e-223 780.4 558 69.5
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 3.2e-222 775.4 580 68.3
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.2e-221 773.5 631 63.1
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.6e-221 773.1 575 68.5
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 7.9e-221 770.8 553 69.3
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 7.9e-221 770.8 573 67.5
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 4.3e-219 765.0 585 67.5
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.3e-207 726.9 562 65.1
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 5.5e-206 721.5 589 62.8
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.3e-202 710.3 621 59.6
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.2e-202 709.5 472 73.9
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 2.8e-202 709.1 415 82.9
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 5.9e-200 701.4 469 73.3
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.0e-196 690.6 571 63.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 2.0e-192 676.4 432 76.9
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.7e-183 646.7 430 74.9
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 9.5e-182 641.0 467 68.7
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 6.6e-175 618.2 426 72.8
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 4.3e-174 615.5 609 53.5
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 2.9e-170 602.8 411 73.5
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 3.2e-169 599.4 607 52.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 3.2e-169 599.4 607 52.1
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.0e-163 580.1 419 71.1
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.6e-160 570.5 422 68.0
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.0e-160 570.1 417 68.3
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 4.4e-155 552.4 539 54.0
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 4.9e-154 548.9 402 69.7
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 3.2e-153 546.2 603 51.6
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 5.8e-139 498.8 320 78.4
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 6.0e-128 462.2 318 72.0
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.8e-119 434.1 541 45.5
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 2.3e-119 433.7 651 39.2
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 3.7e-117 426.4 313 64.5
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 1.6e-96 357.8 239 74.5
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 2.9e-82 310.5 198 76.3
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.9e-74 283.9 562 34.9
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 9.5e-65 252.3 161 75.2
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.0e-63 248.8 390 38.7
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.2e-56 225.3 122 87.7
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.5e-54 218.4 117 85.5
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 5.8e-54 216.5 114 87.7
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.1e-52 210.3 117 82.1
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.5e-46 191.8 121 80.2
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 5.0e-42 176.8 109 78.9
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.4e-39 168.7 150 59.3
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.1e-23 115.9 143 49.0
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.6e-22 111.3 68 72.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.6e-14 84.7 451 24.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.9e-13 81.3 54 63.0
Os09g0338200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 3.7e-08 64.3 173 31.2
Zm00001eb047910 Zea mays HOM05D000563 ORTHO05D000536 2.6e-06 58.2 141 29.8
CBR_g46594 Chara braunii HOM05D002203 ORTHO05D002647 5.8e-06 57.0 162 26.5
Os11g0630700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.8e-06 57.0 155 29.0
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 5.8e-06 57.0 145 25.5
Sabra09G0122600 Salix brachista HOM05D000563 ORTHO05D000536 7.6e-06 56.6 68 41.2


User provided reference genes

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